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BaseInfo

ncRNA ID	bra-miR156a-5p
Species	Brassica rapa
Class	miRNA
Genome position	chrA2:2983764-2983891 [+]
Reference genome	Brapa_1.1
Source	miRBase
Length	20
Mature sequence(if miRNA)	15 - UGACAGAAGAGAGUGAGCAC - 34
Stem-loop(if miRNA)	--AA  UA     A         -                    GGCU   UU     ---    UUU     GG  AGGGG GGUGACAGA AGAGAGUGAGCACACAUGGU    UUC  GCAUG   CUUU   C     ||  ||||| ||||||||| ||||||||||||||||||||    |||  |||||   ||||     UC  UCUUC CCACUGUCU UCUCUCAUUCGUGUGUAUCG    AAG  CGUAC   GGGA   A UCUC  UC     C         C                    ----   UU     UUU    UUA
Stem-loop sequence	AAGGUAAGGGGAGGUGACAGAAGAGAGUGAGCACACAUGGUGGCUUUCUUGCAUGCUUUUUUCAAUUAGGGUUUCAUGCUUGAAGCUAUGUGUGCUUACUCUCUCUCUGUCACCCCUUCUCUCUCUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009104735.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1932   GUGCUCUCUCUCUUCUGUCA   1951 Target Full Sequence	1.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103829068), transcript variant X1, mRNA	squamosa promoter-binding-like protein 10(LOC103829068)	coding protein	psRNATarget
XM_009104737.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1926   GUGCUCUCUCUCUUCUGUCA   1945 Target Full Sequence	1.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103829068), transcript variant X3, mRNA	squamosa promoter-binding-like protein 10(LOC103829068)	coding protein	psRNATarget
XM_018653833.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1770   GUGCUCUCUCUCUUCUGUCA   1789 Target Full Sequence	1.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103835406), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018653131.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1739   GUGCUCUCUCUCUUCUGUCA   1758 Target Full Sequence	1.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 11 (LOC103829069), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018659841.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1557   GUGCUCUCUCUCUUCUGUCA   1576 Target Full Sequence	1.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 2 (LOC103827978), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_009144564.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1154   GUGCUCUCUCUCUUCUGUCA   1173 Target Full Sequence	1.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 9 (LOC103866616), mRNA	squamosa promoter-binding-like protein 9(LOC103866616)	coding protein	psRNATarget
XM_009103544.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1212   GUGCUCUCUCUCUUCUGUCA   1231 Target Full Sequence	1.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 2 (LOC103827978), transcript variant X2, mRNA	squamosa promoter-binding-like protein 2(LOC103827978)	coding protein	psRNATarget
XM_009103545.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1173   GUGCUCUCUCUCUUCUGUCA   1192 Target Full Sequence	1.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 2 (LOC103827978), transcript variant X3, mRNA	squamosa promoter-binding-like protein 2(LOC103827978)	coding protein	psRNATarget
XM_009115758.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1236   GUGCUCUCUCUCUUCUGUCA   1255 Target Full Sequence	1.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 2 (LOC103839253), transcript variant X1, mRNA	squamosa promoter-binding-like protein 2(LOC103839253)	coding protein	psRNATarget
XM_018654907.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1235   GUGCUCUCUCUCUUCUGUCA   1254 Target Full Sequence	1.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 2 (LOC103839253), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018659842.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1130   GUGCUCUCUCUCUUCUGUCA   1149 Target Full Sequence	1.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 2 (LOC103827978), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_009104736.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1243   GUGCUCUCUCUCUUCUGUCA   1262 Target Full Sequence	1.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103829068), transcript variant X2, mRNA	squamosa promoter-binding-like protein 10(LOC103829068)	coding protein	psRNATarget
XM_009143798.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1077   GUGCUCUCUCUCUUCUGUCA   1096 Target Full Sequence	1.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 9 (LOC103865930), mRNA	squamosa promoter-binding-like protein 9(LOC103865930)	coding protein	psRNATarget
XM_009104738.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1300   GUGCUCUCUCUCUUCUGUCA   1319 Target Full Sequence	1.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 11 (LOC103829069), transcript variant X1, mRNA	squamosa promoter-binding-like protein 11(LOC103829069)	coding protein	psRNATarget
XM_018655172.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1235   GUGCUCUCUCUCUUCUGUCA   1254 Target Full Sequence	1.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103839042), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_009115520.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1230   GUGCUCUCUCUCUUCUGUCA   1249 Target Full Sequence	1.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103839042), transcript variant X2, mRNA	squamosa promoter-binding-like protein 10(LOC103839042)	coding protein	psRNATarget
XM_009115759.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1121   GUGCUCUCUCUCUUCUGUCA   1140 Target Full Sequence	1.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 2 (LOC103839253), transcript variant X2, mRNA	squamosa promoter-binding-like protein 2(LOC103839253)	coding protein	psRNATarget
XM_009111566.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1230   GUGCUCUCUCUCUUCUGUCA   1249 Target Full Sequence	1.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103835406), transcript variant X2, mRNA	squamosa promoter-binding-like protein 10(LOC103835406)	coding protein	psRNATarget
XM_009111568.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1225   GUGCUCUCUCUCUUCUGUCA   1244 Target Full Sequence	1.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103835406), transcript variant X3, mRNA	squamosa promoter-binding-like protein 10(LOC103835406)	coding protein	psRNATarget
XM_009129458.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:966   GUGCUCUCUCUCUUCUGUCA   985 Target Full Sequence	1.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 6 (LOC103852554), mRNA	squamosa promoter-binding-like protein 6(LOC103852554)	coding protein	psRNATarget
XM_009105834.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:745   GUGCUCUCUCUCUUCUGUCA   764 Target Full Sequence	1.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 15 (LOC103830125), mRNA	squamosa promoter-binding-like protein 15(LOC103830125)	coding protein	psRNATarget
XM_009107215.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   |||||==||||||||||||| targets:824   GUGCUUGCUCUCUUCUGUCA   843 Target Full Sequence	2.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 6 (LOC103831318), transcript variant X2, mRNA	squamosa promoter-binding-like protein 6(LOC103831318)	coding protein	psRNATarget
XM_009107214.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   |||||==||||||||||||| targets:817   GUGCUUGCUCUCUUCUGUCA   836 Target Full Sequence	2.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 6 (LOC103831318), transcript variant X1, mRNA	squamosa promoter-binding-like protein 6(LOC103831318)	coding protein	psRNATarget
XM_009145581.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   *||||==||||||||||||| targets:701   UUGCUUGCUCUCUUCUGUCA   720 Target Full Sequence	2.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 3 (LOC103867507), mRNA	squamosa promoter-binding-like protein 3(LOC103867507)	coding protein	psRNATarget
XM_009143099.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   *||||==||||||||||||| targets:606   UUGCUUGCUCUCUUCUGUCA   625 Target Full Sequence	2.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 3 (LOC103865301), mRNA	squamosa promoter-binding-like protein 3(LOC103865301)	coding protein	psRNATarget
XM_009134706.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   *||||==||||||||||||| targets:550   UUGCUUGCUCUCUUCUGUCA   569 Target Full Sequence	2.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 3 (LOC103857508), mRNA	squamosa promoter-binding-like protein 3(LOC103857508)	coding protein	psRNATarget
XM_009115522.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   |||||=*||||||||||||| targets:1297   GUGCUUUCUCUCUUCUGUCA   1316 Target Full Sequence	2.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 11 (LOC103839045), transcript variant X1, mRNA	squamosa promoter-binding-like protein 11(LOC103839045)	coding protein	psRNATarget
XM_009115524.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   |||||=*||||||||||||| targets:1234   GUGCUUUCUCUCUUCUGUCA   1253 Target Full Sequence	2.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 11 (LOC103839045), transcript variant X3, mRNA	squamosa promoter-binding-like protein 11(LOC103839045)	coding protein	psRNATarget
XM_009115523.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   |||||=*||||||||||||| targets:1226   GUGCUUUCUCUCUUCUGUCA   1245 Target Full Sequence	2.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 11 (LOC103839045), transcript variant X2, mRNA	squamosa promoter-binding-like protein 11(LOC103839045)	coding protein	psRNATarget
XM_009115526.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   |||||=*||||||||||||| targets:1206   GUGCUUUCUCUCUUCUGUCA   1225 Target Full Sequence	2.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 11 (LOC103839045), transcript variant X4, mRNA	squamosa promoter-binding-like protein 11(LOC103839045)	coding protein	psRNATarget
XM_009140754.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   |||=||*||||||||||||| targets:793   GUGUUCUCUCUCUUCUGUCA   812 Target Full Sequence	2.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 15 (LOC103863019), transcript variant X1, mRNA	squamosa promoter-binding-like protein 15(LOC103863019)	coding protein	psRNATarget
XM_009140755.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   |||=||*||||||||||||| targets:766   GUGUUCUCUCUCUUCUGUCA   785 Target Full Sequence	2.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 15 (LOC103863019), transcript variant X2, mRNA	squamosa promoter-binding-like protein 15(LOC103863019)	coding protein	psRNATarget
XM_009134452.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   |*||||*||||||||||||| targets:1153   GCGCUCUCUCUCUUCUGUCA   1172 Target Full Sequence	2.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 13A (LOC103857275), transcript variant X3, mRNA	squamosa promoter-binding-like protein 13A(LOC103857275)	coding protein	psRNATarget
XM_009134450.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   |*||||*||||||||||||| targets:1060   GCGCUCUCUCUCUUCUGUCA   1079 Target Full Sequence	2.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 13A (LOC103857275), transcript variant X1, mRNA	squamosa promoter-binding-like protein 13A(LOC103857275)	coding protein	psRNATarget
XM_009134451.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   |*||||*||||||||||||| targets:1044   GCGCUCUCUCUCUUCUGUCA   1063 Target Full Sequence	2.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 13A (LOC103857275), transcript variant X2, mRNA	squamosa promoter-binding-like protein 13A(LOC103857275)	coding protein	psRNATarget
XM_009148024.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   **||||*||||||||||||| targets:1075   CCGCUCUCUCUCUUCUGUCA   1094 Target Full Sequence	2.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 5 (LOC103869942), mRNA	squamosa promoter-binding-like protein 5(LOC103869942)	coding protein	psRNATarget
XM_009117412.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   **||||*||||||||||||| targets:635   CAGCUCUCUCUCUUCUGUCA   654 Target Full Sequence	2.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 5 (LOC103840895), mRNA	squamosa promoter-binding-like protein 5(LOC103840895)	coding protein	psRNATarget
XM_009141831.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ***|||*||||||||||||| targets:102   UCUCUCUCUCUCUUCUGUCA   121 Target Full Sequence	3.0	PREDICTED: Brassica rapa AT-hook motif nuclear-localized protein 5-like (LOC103864067), mRNA	AT-hook motif nuclear-localized protein 5-like(LOC103864067)	coding protein	psRNATarget
XM_018658825.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ***|||*||||||||||||| targets:823   UCUCUCUCUCUCUUCUGUCA   842 Target Full Sequence	3.0	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 5 (LOC103868453), transcript variant X2, mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014).