Search result

BaseInfo

ncRNA ID	novel_gma_miR378
Species	Glycine max
Class	miRNA
Genome position	Chr1:41441848-41442065 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451630;SRR1451647;SRR1451648;SRR3160568
Length	24
Mature sequence(if miRNA)	195 - AAUAACCGUCUUUGAUUGUAAAGU - 218
Stem-loop(if miRNA)	--               -    -----------AAA   U  CACACCU       A        AACUAAUAACCGACUUUGAAUGCCUAUUCUGACACACAGUUCAAAGACGGUUAU   AAUAACCGUCUUUGA UUGU              GUC GA       UUCAAAG CGGUUAUU                                                      U   ||||||||||||||| ||||              ||| ||       ||||||| ||||||||                                                      A   UUAUUGGCAGAAACU GACA              UAA GU       UUCUGCC AAUAAUCG                                                      G AA               U    CACAGUCUUAUCCG   -  -------       -        AUUAUUGGCAGAAACAUACAACACAGUCUCAAAUGUAAGUUUCUGCCAAUAAAC
Stem-loop sequence	AAUAACCGUCUUUGAUUGUAAAGUCUGACACACCUUUCAAAGACGGUUAUUAACUAAUAACCGACUUUGAAUGCCUAUUCUGACACACAGUUCAAAGACGGUUAUUAGCAAAUAACCGUCUUUGAAUGUAAACUCUGACACAACAUACAAAGACGGUUAUUAGCUAAUAACCGUCUUUGAAUGCCUAUUCUGACACACAGUUCAAAGACGGUUAUUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014775607.1	ncRNA:24   UGAAAUGUUAGUUUCUGCCAAUAA   1   ||*|*|||*||||||||||||||| targets:1483   ACAUAACAUUCAAAGACGGUUAUU   1506 Target Full Sequence	1.0	PREDICTED: Glycine max protein MOR1 (LOC102659664), transcript variant X1, mRNA	protein MOR1(LOC102659664)	coding protein	psRNATarget
XM_014775607.1	ncRNA:24   UGAAAUGUUAGUUUCUGCCAAUAA   1   |****|||*||||||||||||||| targets:1538   AAGCAACAUUCAAAGACGGUUAUU   1561 Target Full Sequence	1.0	PREDICTED: Glycine max protein MOR1 (LOC102659664), transcript variant X1, mRNA	protein MOR1(LOC102659664)	coding protein	psRNATarget
XM_014775607.1	ncRNA:24   UGAAAUGUUAGUUUCUGCCAAUAA   1   ||*|*|||*||||||=|||||||| targets:1593   ACAUAACAUUCAAAGGCGGUUAUU   1616 Target Full Sequence	2.5	PREDICTED: Glycine max protein MOR1 (LOC102659664), transcript variant X1, mRNA	protein MOR1(LOC102659664)	coding protein	psRNATarget