ncRNA ID | bra-miR2111b-3p |
Species | Brassica rapa |
Class | miRNA |
Genome position | chrA2:1604685-1604797 [+] |
Reference genome | Brapa_1.1 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 82 - AUCCUCGGGAUACGGAUUACC - 102 |
Stem-loop(if miRNA) |
     A   CU         C         U       U     G  AAUUAAA    G GGUGA GAA  GGUAAUCUG AUCCUGAGG UUAAAAA UUAUA GC       ACAU C ||||| |||  ||||||||| ||||||||| ||||||| ||||| ||       |||| UCAUU CUU  CCAUUAGGC UAGGGCUCC AAUUUUU GGUAU UG       UGUA A      C   CU         A         U       U     G  -------    A |
Stem-loop sequence | GGUGAAGAACUGGUAAUCUGCAUCCUGAGGUUUAAAAAUUUAUAGGCAAUUAAAACAUGCAAAUGUGUGUAUGGUUUUUUAAUCCUCGGGAUACGGAUUACCUCUUCCUUACU |
1 | PMID:19854858
"Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing"; Hsieh LC, Lin SI, Shih AC, Chen JW, Lin WY, Tseng CY, Li WH, Chiou TJ; Plant Physiol. 151:2120-2132(2009). |