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BaseInfo

ncRNA ID bra-miR2111b-3p
Species Brassica rapa
Class miRNA
Genome position chrA2:1604685-1604797 [+]
Reference genome Brapa_1.1
Source miRBase
Length 21
Mature sequence(if miRNA) 82 - AUCCUCGGGAUACGGAUUACC - 102
Stem-loop(if miRNA)      A   CU         C         U       U     G  AAUUAAA    G
GGUGA GAA  GGUAAUCUG AUCCUGAGG UUAAAAA UUAUA GC       ACAU C
||||| |||  ||||||||| ||||||||| ||||||| ||||| ||       ||||
UCAUU CUU  CCAUUAGGC UAGGGCUCC AAUUUUU GGUAU UG       UGUA A
     C   CU         A         U       U     G  -------    A
Stem-loop sequence GGUGAAGAACUGGUAAUCUGCAUCCUGAGGUUUAAAAAUUUAUAGGCAAUUAAAACAUGCAAAUGUGUGUAUGGUUUUUUAAUCCUCGGGAUACGGAUUACCUCUUCCUUACU

Reference

1 PMID:19854858
"Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing";
Hsieh LC, Lin SI, Shih AC, Chen JW, Lin WY, Tseng CY, Li WH, Chiou TJ;
Plant Physiol. 151:2120-2132(2009).