Search result

BaseInfo

ncRNA ID	novel_gma_miR372
Species	Glycine max
Class	miRNA
Genome position	Chr15:14166047-14166195 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451630;SRR1451632;SRR3067738;SRR835758;SRR835759;SRR835761;SRR835762;SRR835763;SRR835766;SRR835767;SRR835770;SRR835771;SRR1451614
Length	22
Mature sequence(if miRNA)	1 - CCAAGAGGCAGAAAGUGGAGUG - 22
Stem-loop(if miRNA)	--CCA     C             C         U                CACU        C    UU    A      AGAGG AGAAAGUGGAGUG AGCCAAGGG GAUUUGCCGGCACAGG    AAUUAGUU AAUA  GAAU G      ||||| ||||||||||||| ||||||||| ||||||||||||||||    |||||||| ||||  |||| U      UCUUC UCUUUCGCUUUAC UCGGUUCUC UUGAACGGCCGUGUCU    UUAGUUAG UUGU  CUUG U UGUCC     U             A         U                UCAU        U    --    A
Stem-loop sequence	CCAAGAGGCAGAAAGUGGAGUGCAGCCAAGGGUGAUUUGCCGGCACAGGCACUAAUUAGUUCAAUAUUGAAUAGUUAGUUCUGUUUGAUUGAUUUACUUCUGUGCCGGCAAGUUUCUCUUGGCUACAUUUCGCUUUCUUCUUCUCCUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014770825.1	ncRNA:22   GUGAGGUGAAAGACGGAGAACC   1   =*=|||||||||||=||||||| targets:739   UCUUCCACUUUCUGUCUCUUGG   760 Target Full Sequence	1.5	PREDICTED: Glycine max E3 ubiquitin-protein ligase PRT6-like (LOC100818009), transcript variant X3, mRNA	E3 ubiquitin-protein ligase PRT6-like(LOC100818009)	coding protein	psRNATarget
XM_006602528.2	ncRNA:22   GUGAGGUGAAAGACGGAGAACC   1   =*=|||||||||||=||||||| targets:1930   UCUUCCACUUUCUGUCUCUUGG   1951 Target Full Sequence	1.5	PREDICTED: Glycine max E3 ubiquitin-protein ligase PRT6-like (LOC100818009), transcript variant X2, mRNA	E3 ubiquitin-protein ligase PRT6-like(LOC100818009)	coding protein	psRNATarget
XM_003552121.3	ncRNA:22   GUGAGGUGAAAGACGGAGAACC   1   =*=|||||||||||=||||||| targets:1930   UCUUCCACUUUCUGUCUCUUGG   1951 Target Full Sequence	1.5	PREDICTED: Glycine max E3 ubiquitin-protein ligase PRT6-like (LOC100818009), transcript variant X1, mRNA	E3 ubiquitin-protein ligase PRT6-like(LOC100818009)	coding protein	psRNATarget
XM_014772558.1	ncRNA:22   GUGAGGUGAAAGACGGAGAACC   1   |*||||||||||||=||||||* targets:130   CCCUCCACUUUCUGUCUCUUGC   151 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100819666 (LOC100819666), mRNA	uncharacterized LOC100819666(LOC100819666)	coding protein	psRNATarget
XM_006604736.2	ncRNA:22   GUGAGGUGAAAGACGGAGAACC   1   *|*|||==|||||||||||||* targets:624   GAAUCCGUUUUCUGCCUCUUGA   645 Target Full Sequence	3.0	PREDICTED: Glycine max F-box/LRR-repeat protein 3-like (LOC100810033), transcript variant X2, mRNA	F-box/LRR-repeat protein 3-like(LOC100810033)	coding protein	psRNATarget
XM_003521631.3	ncRNA:22   GUGAGGUGAAAGACGGAGAACC   1   *|*|||==|||||||||||||* targets:615   GAAUCCGUUUUCUGCCUCUUGA   636 Target Full Sequence	3.0	PREDICTED: Glycine max F-box/LRR-repeat protein 3-like (LOC100802904), transcript variant X1, mRNA	F-box/LRR-repeat protein 3-like(LOC100802904)	coding protein	psRNATarget
XM_014773991.1	ncRNA:22   GUGAGGUGAAAGACGGAGAACC   1   *|*|||==|||||||||||||* targets:619   GAAUCCGUUUUCUGCCUCUUGA   640 Target Full Sequence	3.0	PREDICTED: Glycine max F-box/LRR-repeat protein 3-like (LOC100802904), transcript variant X2, mRNA	F-box/LRR-repeat protein 3-like(LOC100802904)	coding protein	psRNATarget
XM_006604735.2	ncRNA:22   GUGAGGUGAAAGACGGAGAACC   1   *|*|||==|||||||||||||* targets:622   GAAUCCGUUUUCUGCCUCUUGA   643 Target Full Sequence	3.0	PREDICTED: Glycine max F-box/LRR-repeat protein 3-like (LOC100810033), transcript variant X1, mRNA	F-box/LRR-repeat protein 3-like(LOC100810033)	coding protein	psRNATarget