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BaseInfo

ncRNA ID	bra-miR2111b-5p
Species	Brassica rapa
Class	miRNA
Genome position	chrA2:1604685-1604797 [+]
Reference genome	Brapa_1.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	14 - UAAUCUGCAUCCUGAGGUUUA - 34
Stem-loop(if miRNA)	A   CU         C         U       U     G  AAUUAAA    G GGUGA GAA  GGUAAUCUG AUCCUGAGG UUAAAAA UUAUA GC       ACAU C ||||| |||  ||||||||| ||||||||| ||||||| ||||| ||       |||| UCAUU CUU  CCAUUAGGC UAGGGCUCC AAUUUUU GGUAU UG       UGUA A      C   CU         A         U       U     G  -------    A
Stem-loop sequence	GGUGAAGAACUGGUAAUCUGCAUCCUGAGGUUUAAAAAUUUAUAGGCAAUUAAAACAUGCAAAUGUGUGUAUGGUUUUUUAAUCCUCGGGAUACGGAUUACCUCUUCCUUACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009153742.2	ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1   *|=|||||||||||||||||| targets:661   CAGACCUCAGGAUGCAGAUUA   681 Target Full Sequence	1.0	PREDICTED: Brassica rapa F-box/kelch-repeat protein At3g27150 (LOC103875246), mRNA	F-box/kelch-repeat protein At3g27150(LOC103875246)	coding protein	psRNATarget
XM_009131199.2	ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1   |||||*||||||||||||||| targets:236   UAAACAUCAGGAUGCAGAUUA   256 Target Full Sequence	1.0	PREDICTED: Brassica rapa F-box/kelch-repeat protein At3g27150-like (LOC103854265), transcript variant X2, mRNA	F-box/kelch-repeat protein At3g27150-like(LOC103854265)	coding protein	psRNATarget
XM_009131198.2	ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1   |||||*||||||||||||||| targets:257   UAAACAUCAGGAUGCAGAUUA   277 Target Full Sequence	1.0	PREDICTED: Brassica rapa F-box/kelch-repeat protein At3g27150-like (LOC103854265), transcript variant X1, mRNA	F-box/kelch-repeat protein At3g27150-like(LOC103854265)	coding protein	psRNATarget

Reference

1	PMID:19854858 "Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing"; Hsieh LC, Lin SI, Shih AC, Chen JW, Lin WY, Tseng CY, Li WH, Chiou TJ; Plant Physiol. 151:2120-2132(2009).