Search result

BaseInfo

ncRNA ID bra-miR5722
Species Brassica rapa
Class miRNA
Genome position chrA10:11342742-11342957 [+]
Reference genome Brapa_1.1
Source miRBase
Length 22
Mature sequence(if miRNA) 41 - UGAAAUAGAGUCAUGUGGAACG - 62
Stem-loop(if miRNA) UUA           C        -                C     U    --               U   G A  U C   -    --    C   U    U G     A
   CAGUCAAUCAA CAAUCAUC AUUUCUUGAUUAGUAU UGAAA AGAG  UCAUGUGGAACGUUG UUG G AG C ACA AGUU  UCAA UCA AUCA U AUUCA G
   ||||||||||| |||||||| |||||||||||||||| ||||| ||||  ||||||||||||||| ||| | || | ||| ||||  |||| ||| |||| | ||||| A
   GUUAGUUAGUU GUUAGUAG UGAAGAACUAAUUAUA ACUUU UCUC  AGUACACUUUGCGAC AAC C UC G UGU UCAG  AGUU AGU UAGU A UAGGU A
---           A        G                A     C    UA               U   A A  U U   G    UU    -   -    U G     G
Stem-loop sequence UUACAGUCAAUCAACCAAUCAUCAUUUCUUGAUUAGUAUCUGAAAUAGAGUCAUGUGGAACGUUGUUUGGGAAGUCCACAAGUUUCAACUCAUAUCAUUGAUUCAAGAAGUGGAUGAUUGAUUGAUUGAUUGACUGUGUUGUCUACACAAUCAGCGUUUCACAUGAAUCUCUCUUUCAAAUAUUAAUCAAGAAGUGGAUGAUUGAUUGAUUGAUUG

Reference

1 PMID:22025521
"Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa";
Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y;
J Exp Bot. 63:1025-1038(2012).