ncRNA ID | bra-miR5722 |
Species | Brassica rapa |
Class | miRNA |
Genome position | chrA10:11342742-11342957 [+] |
Reference genome | Brapa_1.1 |
Source | miRBase |
Length | 22 |
Mature sequence(if miRNA) | 41 - UGAAAUAGAGUCAUGUGGAACG - 62 |
Stem-loop(if miRNA) |
UUA           C        -                C     U    --               U   G A  U C   -    --    C   U    U G     A    CAGUCAAUCAA CAAUCAUC AUUUCUUGAUUAGUAU UGAAA AGAG  UCAUGUGGAACGUUG UUG G AG C ACA AGUU  UCAA UCA AUCA U AUUCA G    ||||||||||| |||||||| |||||||||||||||| ||||| ||||  ||||||||||||||| ||| | || | ||| ||||  |||| ||| |||| | ||||| A    GUUAGUUAGUU GUUAGUAG UGAAGAACUAAUUAUA ACUUU UCUC  AGUACACUUUGCGAC AAC C UC G UGU UCAG  AGUU AGU UAGU A UAGGU A ---           A        G                A     C    UA               U   A A  U U   G    UU    -   -    U G     G |
Stem-loop sequence | UUACAGUCAAUCAACCAAUCAUCAUUUCUUGAUUAGUAUCUGAAAUAGAGUCAUGUGGAACGUUGUUUGGGAAGUCCACAAGUUUCAACUCAUAUCAUUGAUUCAAGAAGUGGAUGAUUGAUUGAUUGAUUGACUGUGUUGUCUACACAAUCAGCGUUUCACAUGAAUCUCUCUUUCAAAUAUUAAUCAAGAAGUGGAUGAUUGAUUGAUUGAUUG |
1 | PMID:22025521
"Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa"; Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y; J Exp Bot. 63:1025-1038(2012). |