ncRNA ID | novel_gma_miR340 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr20:5258586-5258786 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1294478;SRR1294479;SRR2045231;SRR2045232 |
Length | 24 |
Mature sequence(if miRNA) | 178 - AAUUAGAGAACCAAAUUGAACCCA - 201 |
Stem-loop(if miRNA) |
--             CU      C       --CU  A   U      CCU      ---U     AA     C   G   U     -  GCA           CU   GGUUCAAUUUGGU  UCUAAU UUUAAAA    GA UCA UUUGGU   UUUGCC    AAAUU  AUUAA GGU UUA GAAAU GU   UUUUGUGGCGG  U   |||||||||||||  |||||| |||||||    || ||| ||||||   ||||||    |||||  ||||| ||| ||| ||||| ||   |||||||||||  U   CCAAGUUAAACCA  AGAUUA AAAUUUU    CU AGU AAACCA   AGAUGG    UUUAA  UAGUU CUA AAU CUUUA CA   GAAACACCGUC  A AC             AG      -       UAAU  A   U      ---      CAGU     CC     A   G   U     A  --A           AA |
Stem-loop sequence | GGUUCAAUUUGGUCUUCUAAUCUUUAAAACUGAAUCAUUUUGGUCCUUUUGCCUAAAUUAAAUUAACGGUGUUAUGAAAUGUGCAUUUUGUGGCGGCUUUAAACUGCCACAAAGAACAAUUUCUUAAGAUCAUUGAUCCAAUUUUGACGGUAGAACCAAAUUGAAUCUAAUUUUUAAAAUUAGAGAACCAAAUUGAACCCA |