ncRNA ID | bra-miR2111-3p |
Species | Brassica rapa |
Class | miRNA |
Genome position | chrA1:27648068-27648204 [-] |
Reference genome | Brapa_1.1 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 17 - GACCUCAGGAUGCGGAUUACC - 37 |
Stem-loop(if miRNA) |
-UAUUG       CC                          -   ----   G          A      G       GUGAGGA  GGGUAAUCUGCAUCCUGGGGUUUAAG GUU    UAA UACACGCAAA AUAUGC U       |||||||  |||||||||||||||||||||||||| |||    ||| |||||||||| ||||||       CAUUCCU  UCCAUUAGGCGUAGGACUCCAGAUUU CGA    AUU GUGUGUGUUU UAUACG A GCAUAA       UC                          U   UAUG   -          A      C |
Stem-loop sequence | UAUUGGUGAGGACCGGGUAAUCUGCAUCCUGGGGUUUAAGGUUUAAGUACACGCAAAAAUAUGCGUACGCAUAUAUUUGUGUGUGUUAGUAUAGCUUUUAGACCUCAGGAUGCGGAUUACCUCUUCCUUACAAUACG |
1 | PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014). |