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BaseInfo

ncRNA ID bra-miR2111-3p
Species Brassica rapa
Class miRNA
Genome position chrA1:27648068-27648204 [-]
Reference genome Brapa_1.1
Source miRBase
Length 21
Mature sequence(if miRNA) 17 - GACCUCAGGAUGCGGAUUACC - 37
Stem-loop(if miRNA) -UAUUG       CC                          -   ----   G          A      G
      GUGAGGA  GGGUAAUCUGCAUCCUGGGGUUUAAG GUU    UAA UACACGCAAA AUAUGC U
      |||||||  |||||||||||||||||||||||||| |||    ||| |||||||||| ||||||
      CAUUCCU  UCCAUUAGGCGUAGGACUCCAGAUUU CGA    AUU GUGUGUGUUU UAUACG A
GCAUAA       UC                          U   UAUG   -          A      C
Stem-loop sequence UAUUGGUGAGGACCGGGUAAUCUGCAUCCUGGGGUUUAAGGUUUAAGUACACGCAAAAAUAUGCGUACGCAUAUAUUUGUGUGUGUUAGUAUAGCUUUUAGACCUCAGGAUGCGGAUUACCUCUUCCUUACAAUACG

Reference

1 PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis";
Jiang J, Lv M, Liang Y, Ma Z, Cao J;
BMC Genomics. 15:146(2014).