| ncRNA ID | bra-miR2111-5p |
| Species | Brassica rapa |
| Class | miRNA |
| Genome position | chrA1:27648068-27648204 [-] |
| Reference genome | Brapa_1.1 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 100 - UAAUCUGCAUCCUGGGGUUUA - 120 |
| Stem-loop(if miRNA) |
-UAUUG CC - ---- G A G GUGAGGA GGGUAAUCUGCAUCCUGGGGUUUAAG GUU UAA UACACGCAAA AUAUGC U ||||||| |||||||||||||||||||||||||| ||| ||| |||||||||| |||||| CAUUCCU UCCAUUAGGCGUAGGACUCCAGAUUU CGA AUU GUGUGUGUUU UAUACG A GCAUAA UC U UAUG - A C |
| Stem-loop sequence | UAUUGGUGAGGACCGGGUAAUCUGCAUCCUGGGGUUUAAGGUUUAAGUACACGCAAAAAUAUGCGUACGCAUAUAUUUGUGUGUGUUAGUAUAGCUUUUAGACCUCAGGAUGCGGAUUACCUCUUCCUUACAAUACG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_009153742.2 |
|
2.0 | PREDICTED: Brassica rapa F-box/kelch-repeat protein At3g27150 (LOC103875246), mRNA | F-box/kelch-repeat protein At3g27150(LOC103875246) | coding protein | psRNATarget | |||||||||
| XM_009131199.2 |
|
2.0 | PREDICTED: Brassica rapa F-box/kelch-repeat protein At3g27150-like (LOC103854265), transcript variant X2, mRNA | F-box/kelch-repeat protein At3g27150-like(LOC103854265) | coding protein | psRNATarget | |||||||||
| XM_009131198.2 |
|
2.0 | PREDICTED: Brassica rapa F-box/kelch-repeat protein At3g27150-like (LOC103854265), transcript variant X1, mRNA | F-box/kelch-repeat protein At3g27150-like(LOC103854265) | coding protein | psRNATarget |
| 1 | PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014). |