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BaseInfo

ncRNA ID bra-miR5716
Species Brassica rapa
Class miRNA
Genome position chrA1:26758337-26758542 [+]
Reference genome Brapa_1.1
Source miRBase
Length 21
Mature sequence(if miRNA) 121 - UUGGAUAAUUGAAGAUAUAAA - 141
Stem-loop(if miRNA) ------                     -CGA     A     C    -UUC   U                      CA         A           CUCU  G
      GAUCCAGACGUGACCAACCAU    CUUCU GUUCC UUCU    CUU UCAUUUAUUGUUUAUAUCUUCA  UAUCUAAAG GUUUCUUCAGU    AU A
      |||||||||||||||||||||    ||||| ||||| ||||    ||| ||||||||||||||||||||||  ||||||||| |||||||||||    ||
      CUAGGUCUGCACUGGUUGGUA    GAAGA CAAGG AAGG    GAA AGUAAGUAACAAAUAUAGAAGU  AUAGGUUUC UAAAGAAGUCA    UA A
CUUUUU                     AACA     C     A    UAAA   C                      UA         A           --UU  A
Stem-loop sequence GAUCCAGACGUGACCAACCAUCGACUUCUAGUUCCCUUCUUUCCUUUUCAUUUAUUGUUUAUAUCUUCACAUAUCUAAAGAGUUUCUUCAGUCUCUAUGAAAAUUUACUGAAGAAAUACUUUGGAUAAUUGAAGAUAUAAACAAUGAAUGACAAGAAAUGGAAAGGAACCAGAAGACAAAUGGUUGGUCACGUCUGGAUCUUUUUC

Reference

1 PMID:22025521
"Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa";
Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y;
J Exp Bot. 63:1025-1038(2012).