ncRNA ID | bra-miR5716 |
Species | Brassica rapa |
Class | miRNA |
Genome position | chrA1:26758337-26758542 [+] |
Reference genome | Brapa_1.1 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 121 - UUGGAUAAUUGAAGAUAUAAA - 141 |
Stem-loop(if miRNA) |
------                     -CGA     A     C    -UUC   U                      CA         A           CUCU  G       GAUCCAGACGUGACCAACCAU    CUUCU GUUCC UUCU    CUU UCAUUUAUUGUUUAUAUCUUCA  UAUCUAAAG GUUUCUUCAGU    AU A       |||||||||||||||||||||    ||||| ||||| ||||    ||| ||||||||||||||||||||||  ||||||||| |||||||||||    ||       CUAGGUCUGCACUGGUUGGUA    GAAGA CAAGG AAGG    GAA AGUAAGUAACAAAUAUAGAAGU  AUAGGUUUC UAAAGAAGUCA    UA A CUUUUU                     AACA     C     A    UAAA   C                      UA         A           --UU  A |
Stem-loop sequence | GAUCCAGACGUGACCAACCAUCGACUUCUAGUUCCCUUCUUUCCUUUUCAUUUAUUGUUUAUAUCUUCACAUAUCUAAAGAGUUUCUUCAGUCUCUAUGAAAAUUUACUGAAGAAAUACUUUGGAUAAUUGAAGAUAUAAACAAUGAAUGACAAGAAAUGGAAAGGAACCAGAAGACAAAUGGUUGGUCACGUCUGGAUCUUUUUC |
1 | PMID:22025521
"Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa"; Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y; J Exp Bot. 63:1025-1038(2012). |