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BaseInfo

ncRNA ID	novel_gma_miR298
Species	Glycine max
Class	miRNA
Genome position	Chr3:25513245-25513354 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451629
Length	24
Mature sequence(if miRNA)	1 - AUUUUCUGUUUUUAUUUUCUGAAA - 24
Stem-loop(if miRNA)	--      --           UC       UGUUUUCA   UCAAAAGAUUAAAAUU   AUUUUC  UGUUUUUAUUU  UGAAAAC        UUU                C   ||||||  |||||||||||  |||||||        |||                U   UAAAAG  ACAAAAAUAAA  GCUUUUG        CAG                G UU      UC           GA       ---UUCUU   UUUGGUUUGUAAAAAA
Stem-loop sequence	AUUUUCUGUUUUUAUUUUCUGAAAACUGUUUUCAUUUUCAAAAGAUUAAAAUUCUGAAAAAAUGUUUGGUUUGACUUCUUGUUUUCGAGAAAUAAAAACACUGAAAAUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006580262.2	ncRNA:24   AAAGUCUUUUAUUUUUGUCUUUUA   1   **|||||||*|||||||||||||* targets:9   CGUCAGAAAUUAAAAACAGAAAAG   32 Target Full Sequence	2.0	PREDICTED: Glycine max carbamoyl-phosphate synthase small chain, chloroplastic-like (LOC100776931), transcript variant X2, mRNA	carbamoyl-phosphate synthase small chain, chloroplastic-like(LOC100776931)	coding protein	psRNATarget
XM_003525056.3	ncRNA:24   AAAGUCUUUUAUUUUUGUCUUUUA   1   **|||||||*|||||||||||||* targets:6   CGUCAGAAAUUAAAAACAGAAAAG   29 Target Full Sequence	2.0	PREDICTED: Glycine max carbamoyl-phosphate synthase small chain, chloroplastic-like (LOC100776931), transcript variant X1, mRNA	carbamoyl-phosphate synthase small chain, chloroplastic-like(LOC100776931)	coding protein	psRNATarget
XM_014768363.1	ncRNA:24   AAAGUCUUUUAUUUUUGUCUUUUA   1   |||--|||=||||||||||||||* targets:1335   UUU--GAAGAUAAAAACAGAAAAG   1356 Target Full Sequence	2.0	PREDICTED: Glycine max G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 (LOC100794677), transcript variant X7, mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520(LOC100794677)	coding protein	psRNATarget
XM_006597932.2	ncRNA:24   AAAGUCUUUUAUUUUUGUCUUUUA   1   |||--|||=||||||||||||||* targets:1345   UUU--GAAGAUAAAAACAGAAAAG   1366 Target Full Sequence	2.0	PREDICTED: Glycine max G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 (LOC100794677), transcript variant X6, mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520(LOC100794677)	coding protein	psRNATarget
XM_006597930.2	ncRNA:24   AAAGUCUUUUAUUUUUGUCUUUUA   1   |||--|||=||||||||||||||* targets:1336   UUU--GAAGAUAAAAACAGAAAAG   1357 Target Full Sequence	2.0	PREDICTED: Glycine max G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 (LOC100794677), transcript variant X1, mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520(LOC100794677)	coding protein	psRNATarget
XM_014768361.1	ncRNA:24   AAAGUCUUUUAUUUUUGUCUUUUA   1   |||--|||=||||||||||||||* targets:1339   UUU--GAAGAUAAAAACAGAAAAG   1360 Target Full Sequence	2.0	PREDICTED: Glycine max G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 (LOC100794677), transcript variant X4, mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520(LOC100794677)	coding protein	psRNATarget
XM_014768360.1	ncRNA:24   AAAGUCUUUUAUUUUUGUCUUUUA   1   |||--|||=||||||||||||||* targets:1340   UUU--GAAGAUAAAAACAGAAAAG   1361 Target Full Sequence	2.0	PREDICTED: Glycine max G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 (LOC100794677), transcript variant X3, mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520(LOC100794677)	coding protein	psRNATarget
XM_006597931.2	ncRNA:24   AAAGUCUUUUAUUUUUGUCUUUUA   1   |||--|||=||||||||||||||* targets:1339   UUU--GAAGAUAAAAACAGAAAAG   1360 Target Full Sequence	2.0	PREDICTED: Glycine max G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 (LOC100794677), transcript variant X5, mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520(LOC100794677)	coding protein	psRNATarget
XM_014768359.1	ncRNA:24   AAAGUCUUUUAUUUUUGUCUUUUA   1   |||--|||=||||||||||||||* targets:1340   UUU--GAAGAUAAAAACAGAAAAG   1361 Target Full Sequence	2.0	PREDICTED: Glycine max G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 (LOC100794677), transcript variant X2, mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520(LOC100794677)	coding protein	psRNATarget
XM_006575153.2	ncRNA:24   AAAGUCUUUUAUUUUUGUCUUUUA   1   *||||||=||||||||*||||||| targets:2971   AUUCAGAGAAUAAAAAAAGAAAAU   2994 Target Full Sequence	2.5	PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial (LOC100797551), transcript variant X2, mRNA	putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial(LOC100797551)	coding protein	psRNATarget
XM_003518014.3	ncRNA:24   AAAGUCUUUUAUUUUUGUCUUUUA   1   *||||||=||||||||*||||||| targets:3075   AUUCAGAGAAUAAAAAAAGAAAAU   3098 Target Full Sequence	2.5	PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial (LOC100797551), transcript variant X1, mRNA	putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial(LOC100797551)	coding protein	psRNATarget
XM_003517315.3	ncRNA:24   AAA---GUCUUUUAUUUUUGUCUUUUA   1   *||---|||||||*|=||||||||||| targets:123   AUUGGACAGAAAACAGAAACAGAAAAU   149 Target Full Sequence	2.5	PREDICTED: Glycine max branched-chain-amino-acid aminotransferase 3, chloroplastic (LOC100783594), mRNA	branched-chain-amino-acid aminotransferase 3, chloroplastic(LOC100783594)	coding protein	psRNATarget