ncRNA ID | bra-miR9563a-3p |
Species | Brassica rapa |
Class | miRNA |
Genome position | chrA1:26607663-26607829 [-] |
Reference genome | Brapa_1.1 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 44 - UAAAAGUUAAGAGACAAGUUA - 64 |
Stem-loop(if miRNA) |
GAA   A     ----A    U    A  U     C         G   CC                         --       C    GUU GCAAG     UUAA GGGA GU CUUAG GGAAUAUAA AAC  GUCUCUUAAUUUUUAACUAAAAAAA  UUAAGAA C    ||| |||||     |||| |||| || ||||| ||||||||| |||  |||||||||||||||||||||||||  ||||||| G    CAA CGUUC     AAUU UCCU CG GAAUU CUUUAUAUU UUG  CAGAGAAUUGAAAAUUGAUUUUUUU  AAUUCUU G GGG   -     ACGAG    C    C  U     -         A   AA                         UC       A |
Stem-loop sequence | GAAGUUAGCAAGAUUAAUGGGAAGUUCUUAGCGGAAUAUAAGAACCCGUCUCUUAAUUUUUAACUAAAAAAAUUAAGAACCGGAUUCUUAACUUUUUUUUAGUUAAAAGUUAAGAGACAAGUUAUUAUAUUUCUUAAGUGCCUCCUCUUAAGAGCACUUGCAACGGG |
1 | PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014). |