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BaseInfo

ncRNA ID bra-miR9563a-3p
Species Brassica rapa
Class miRNA
Genome position chrA1:26607663-26607829 [-]
Reference genome Brapa_1.1
Source miRBase
Length 21
Mature sequence(if miRNA) 44 - UAAAAGUUAAGAGACAAGUUA - 64
Stem-loop(if miRNA) GAA   A     ----A    U    A  U     C         G   CC                         --       C
   GUU GCAAG     UUAA GGGA GU CUUAG GGAAUAUAA AAC  GUCUCUUAAUUUUUAACUAAAAAAA  UUAAGAA C
   ||| |||||     |||| |||| || ||||| ||||||||| |||  |||||||||||||||||||||||||  ||||||| G
   CAA CGUUC     AAUU UCCU CG GAAUU CUUUAUAUU UUG  CAGAGAAUUGAAAAUUGAUUUUUUU  AAUUCUU G
GGG   -     ACGAG    C    C  U     -         A   AA                         UC       A
Stem-loop sequence GAAGUUAGCAAGAUUAAUGGGAAGUUCUUAGCGGAAUAUAAGAACCCGUCUCUUAAUUUUUAACUAAAAAAAUUAAGAACCGGAUUCUUAACUUUUUUUUAGUUAAAAGUUAAGAGACAAGUUAUUAUAUUUCUUAAGUGCCUCCUCUUAAGAGCACUUGCAACGGG

Reference

1 PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis";
Jiang J, Lv M, Liang Y, Ma Z, Cao J;
BMC Genomics. 15:146(2014).