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BaseInfo

ncRNA ID novel_gma_miR294
Species Glycine max
Class miRNA
Genome position Chr2:1796198-1796289 [+]
Reference genome Glycine_max_v2.0
Source SRR1451629;SRR1451635;SRR1451636;SRR1451637;SRR1451638;SRR1451640;SRR1451641;SRR1451642;SRR3067737;SRR3160566;SRR835758;SRR835759;SRR835762;SRR835763;SRR835767;SRR835768;SRR835770;SRR1451609;SRR1451611;SRR1451615;SRR1451620
Length 20
Mature sequence(if miRNA) 1 - AUUUCCCUGAACACUUCAUU - 20
Stem-loop(if miRNA) --A      UG         U  --  -    CCUUA          A
   UUUCCC  AACACUUCA UA  GC AAUU     GGUUUCACUG C
   ||||||  ||||||||| ||  || ||||     ||||||||||
   AAGGGG  UUGUGAAGU AU  CG UUGA     CCGGAGUGAC A
CUC      GU         U  AC  A    -UAUC          C
Stem-loop sequence AUUUCCCUGAACACUUCAUUAGCAAUUCCUUAGGUUUCACUGACACCAGUGAGGCCCUAUAGUUAGCCAUAUUGAAGUGUUUGGGGGAACUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006585494.2
ncRNA:20   UUACUUCACAAGUCCCUUUA   1
  |||*|||||||*||||||||
targets:1828   AAUUAAGUGUUGAGGGAAAU   1847

2.5 PREDICTED: Glycine max probable LRR receptor-like serine/threonine-protein kinase At1g05700 (LOC100781084), mRNA probable LRR receptor-like serine/threonine-protein kinase At1g05700(LOC100781084) coding protein psRNATarget
XM_003547290.3
ncRNA:20   UUACUUCACAAGUCCCUUUA   1
  **|||||||||*||||||||
targets:1737   UUUGAAGUGUUGAGGGAAAU   1756

2.5 PREDICTED: Glycine max uncharacterized LOC100799456 (LOC100799456), transcript variant X1, mRNA uncharacterized LOC100799456(LOC100799456) coding protein psRNATarget
XM_014767376.1
ncRNA:20   UUACUUCACAAGUCCCUUUA   1
  **|||||||||*||||||||
targets:1830   UUUGAAGUGUUGAGGGAAAU   1849

2.5 PREDICTED: Glycine max uncharacterized LOC100799456 (LOC100799456), transcript variant X2, mRNA uncharacterized LOC100799456(LOC100799456) coding protein psRNATarget
XM_006601081.2
ncRNA:20   UUACUU-CACAAGUCCCUUUA   1
  *=||||-||||||||||||||
targets:1074   UGUGAAAGUGUUCAGGGAAAU   1094

3.0 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At4g21065-like (LOC100778415), transcript variant X2, mRNA pentatricopeptide repeat-containing protein At4g21065-like(LOC100778415) coding protein psRNATarget
XM_006601080.2
ncRNA:20   UUACUU-CACAAGUCCCUUUA   1
  *=||||-||||||||||||||
targets:1074   UGUGAAAGUGUUCAGGGAAAU   1094

3.0 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At4g21065-like (LOC100778415), transcript variant X1, mRNA pentatricopeptide repeat-containing protein At4g21065-like(LOC100778415) coding protein psRNATarget
XM_006605959.2
ncRNA:20   UUACUUCACAAGUCCCUUUA   1
  |*||*=||||||||||||||
targets:3278   ACUGUGGUGUUCAGGGAAAU   3297

3.0 PREDICTED: Glycine max cysteine-rich receptor-like protein kinase 15 (LOC100790585), transcript variant X4, mRNA cysteine-rich receptor-like protein kinase 15(LOC100790585) coding protein psRNATarget
XM_014772344.1
ncRNA:20   UUACUUCACAAGUCCCUUUA   1
  |*||*=||||||||||||||
targets:3413   ACUGUGGUGUUCAGGGAAAU   3432

3.0 PREDICTED: Glycine max cysteine-rich receptor-like protein kinase 15 (LOC100790585), transcript variant X3, mRNA cysteine-rich receptor-like protein kinase 15(LOC100790585) coding protein psRNATarget
XM_014772343.1
ncRNA:20   UUACUUCACAAGUCCCUUUA   1
  |*||*=||||||||||||||
targets:3414   ACUGUGGUGUUCAGGGAAAU   3433

3.0 PREDICTED: Glycine max cysteine-rich receptor-like protein kinase 15 (LOC100790585), transcript variant X2, mRNA cysteine-rich receptor-like protein kinase 15(LOC100790585) coding protein psRNATarget
XM_006605960.2
ncRNA:20   UUACUUCACAAGUCCCUUUA   1
  |*||*=||||||||||||||
targets:3417   ACUGUGGUGUUCAGGGAAAU   3436

3.0 PREDICTED: Glycine max cysteine-rich receptor-like protein kinase 15 (LOC100790585), transcript variant X1, mRNA cysteine-rich receptor-like protein kinase 15(LOC100790585) coding protein psRNATarget
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