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BaseInfo

ncRNA ID novel_gma_miR286
Species Glycine max
Class miRNA
Genome position Chr20:47466222-47466304 [-]
Reference genome Glycine_max_v2.0
Source SRR1451629
Length 21
Mature sequence(if miRNA) 63 - GUUUGCAGGUUCAUUUAUGUA - 83
Stem-loop(if miRNA) --   UG       A       A   ---     --UAAAG  U
  GUU  CAGGUUC UUUAUGU CUA   GGGAU       UG A
  |||  ||||||| ||||||| |||   |||||       || U
  UAA  GUCCAAG AAAUGUA GAU   UCCUG       AC G
UU   GU       -       C   UAA     UUGUGAA  C
Stem-loop sequence GUUUGCAGGUUCAUUUAUGUACUAGGGAUUAAAGUGUAUGCCAAAGUGUUGUCCUAAUUAGCAUGUAAAGAACCUGUGAAUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK285318.1
ncRNA:21   AUGUAUUUACUUGGACGUUUG   1
  *||||*|||||||||*|||||
targets:161   AACAUCAAUGAACCUACAAAC   181

2.5 Glycine max cDNA, clone: GMFL01-07-G07 NA coding protein psRNATarget
BT095591.1
ncRNA:21   AUGUAUUUACUUGGACGUUUG   1
  *||||*|||||||||*|||||
targets:155   AACAUCAAUGAACCUACAAAC   175

2.5 Soybean clone JCVI-FLGm-19J1 unknown mRNA NA coding protein psRNATarget
XM_003534266.3
ncRNA:21   AUGUAUUUACUUGGACGUUUG   1
  *||||*|||||||||*|||||
targets:229   AACAUCAAUGAACCUACAAAC   249

2.5 PREDICTED: Glycine max uncharacterized LOC100811917 (LOC100811917), transcript variant X1, mRNA uncharacterized LOC100811917(LOC100811917) coding protein psRNATarget
XM_006587572.2
ncRNA:21   AUGUAUUUACUUGGACGUUUG   1
  *||||*|||||||||*|||||
targets:235   AACAUCAAUGAACCUACAAAC   255

2.5 PREDICTED: Glycine max uncharacterized LOC100811917 (LOC100811917), transcript variant X2, mRNA uncharacterized LOC100811917(LOC100811917) coding protein psRNATarget