ncRNA ID | bra-miR9563a-5p |
Species | Brassica rapa |
Class | miRNA |
Genome position | chrA1:26607663-26607829 [-] |
Reference genome | Brapa_1.1 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 104 - ACCCGUCUCUUAAUUUUUAAC - 124 |
Stem-loop(if miRNA) |
GAA A ----A U A U C G CC -- C GUU GCAAG UUAA GGGA GU CUUAG GGAAUAUAA AAC GUCUCUUAAUUUUUAACUAAAAAAA UUAAGAA C ||| ||||| |||| |||| || ||||| ||||||||| ||| ||||||||||||||||||||||||| ||||||| G CAA CGUUC AAUU UCCU CG GAAUU CUUUAUAUU UUG CAGAGAAUUGAAAAUUGAUUUUUUU AAUUCUU G GGG - ACGAG C C U - A AA UC A |
Stem-loop sequence | GAAGUUAGCAAGAUUAAUGGGAAGUUCUUAGCGGAAUAUAAGAACCCGUCUCUUAAUUUUUAACUAAAAAAAUUAAGAACCGGAUUCUUAACUUUUUUUUAGUUAAAAGUUAAGAGACAAGUUAUUAUAUUUCUUAAGUGCCUCCUCUUAAGAGCACUUGCAACGGG |
1 | PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014). |