ncRNA ID | bra-miR164e-3p |
Species | Brassica rapa |
Class | miRNA |
Genome position | chrA1:25366674-25366787 [-] |
Reference genome | Brapa_1.1 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 18 - CACGUGCUCCCCUCCUCCAAC - 38 |
Stem-loop(if miRNA) |
GUA      AAC   C         A  CA             C  --AA     U A    GGUGAG   CUC AUGUUGGAG AG  GGGCACGUGCAAA CA    AAACA G A    ||||||   ||| ||||||||| ||  ||||||||||||| ||    ||||| |    CCACUC   GAG UACAACCUC UC  CUCGUGCACGUUU GU    UUUGU C A UUA      CUC   -         C  CC             C  AUAC     - U |
Stem-loop sequence | GUAGGUGAGAACCUCCAUGUUGGAGAAGCAGGGCACGUGCAAACCAAAAAACAUGAAAUCUGUUUCAUAUGCUUUGCACGUGCUCCCCUCCUCCAACAUGAGCUCCUCACCAUU |
1 | PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014). |