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BaseInfo

ncRNA ID bra-miR164e-3p
Species Brassica rapa
Class miRNA
Genome position chrA1:25366674-25366787 [-]
Reference genome Brapa_1.1
Source miRBase
Length 21
Mature sequence(if miRNA) 18 - CACGUGCUCCCCUCCUCCAAC - 38
Stem-loop(if miRNA) GUA      AAC   C         A  CA             C  --AA     U A
   GGUGAG   CUC AUGUUGGAG AG  GGGCACGUGCAAA CA    AAACA G A
   ||||||   ||| ||||||||| ||  ||||||||||||| ||    ||||| |
   CCACUC   GAG UACAACCUC UC  CUCGUGCACGUUU GU    UUUGU C A
UUA      CUC   -         C  CC             C  AUAC     - U
Stem-loop sequence GUAGGUGAGAACCUCCAUGUUGGAGAAGCAGGGCACGUGCAAACCAAAAAACAUGAAAUCUGUUUCAUAUGCUUUGCACGUGCUCCCCUCCUCCAACAUGAGCUCCUCACCAUU

Reference

1 PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis";
Jiang J, Lv M, Liang Y, Ma Z, Cao J;
BMC Genomics. 15:146(2014).