Search result

BaseInfo

ncRNA ID	novel_gma_miR263
Species	Glycine max
Class	miRNA
Genome position	Chr19:38419162-38419359 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1294478
Length	21
Mature sequence(if miRNA)	1 - AUAGGGACUAAAACAAAAAGU - 21
Stem-loop(if miRNA)	--                    CCUAA        UACAU           UAC     A     A  --U     -UU     U   AG       A    GUA   UUUUUGUUUUAGUCCCUGUA     AAAAACUC     UUUAGUCCCUA   GAGUA UUUUU UA   UUUAA   CUUGU GUU  UUUUUUG UGGU   A   ||||||||||||||||||||     ||||||||     |||||||||||   ||||| ||||| ||   |||||   ||||| |||  ||||||| ||||   AAAAACAAAAUCAGGGAUAU     UUUUUGAG     AAAUCAGGGAU   CUCGU AAAAA AU   AAAUU   GAAUA CAG  GGAAAAC ACCG   A UG                    --AAA        -UUAC           ---     A     A  CAC     CAU     -   -A       -    UCA
Stem-loop sequence	UUUUUGUUUUAGUCCCUGUACCUAAAAAAACUCUACAUUUUAGUCCCUAUACGAGUAAUUUUUAUAUUUUAAUUCUUGUUGUUAGUUUUUUGAUGGUGUAAAACUGCCACAAAAGGAGACAUAAGUACUUAAACACUAAAAAAAAUGCUCUAGGGACUAAACAUUGAGUUUUUAAAUAUAGGGACUAAAACAAAAAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003529187.3	ncRNA:21   UGAAAAACAAAAUCAGGGAUA   1   *=||||||||||||||||||* targets:1431   UUUUUUUGUUUUAGUCCCUAA   1451 Target Full Sequence	1.0	PREDICTED: Glycine max probable xyloglucan endotransglucosylase/hydrolase protein 28 (LOC100778185), transcript variant X1, mRNA	probable xyloglucan endotransglucosylase/hydrolase protein 28(LOC100778185)	coding protein	psRNATarget
BT096980.1	ncRNA:21   UGAAAAACAAAAUCAGGGAUA   1   *=||||||||||||||||||* targets:484   UUUUUUUGUUUUAGUCCCUAA   504 Target Full Sequence	1.0	Soybean clone JCVI-FLGm-21M18 unknown mRNA	NA	coding protein	psRNATarget
XM_006593698.2	ncRNA:21   UGAAAAACAAAAUCAGGGAUA   1   **|||||||||||||||*||| targets:2511   UAUUUUUGUUUUAGUCCGUAU   2531 Target Full Sequence	1.5	PREDICTED: Glycine max protein LAZ1 homolog 1-like (LOC100819153), transcript variant X1, mRNA	protein LAZ1 homolog 1-like(LOC100819153)	coding protein	psRNATarget
XM_006593699.2	ncRNA:21   UGAAAAACAAAAUCAGGGAUA   1   **|||||||||||||||*||| targets:2089   UAUUUUUGUUUUAGUCCGUAU   2109 Target Full Sequence	1.5	PREDICTED: Glycine max protein LAZ1 homolog 1-like (LOC100819153), transcript variant X2, mRNA	protein LAZ1 homolog 1-like(LOC100819153)	coding protein	psRNATarget
XM_014764961.1	ncRNA:21   UGAAAAACAAAAUCAGGGAUA   1   |=||**||||||||||||||| targets:847   AUUUCAUGUUUUAGUCCCUAU   867 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100803123 (LOC100803123), transcript variant X9, mRNA	uncharacterized LOC100803123(LOC100803123)	coding protein	psRNATarget
XM_006590407.2	ncRNA:21   UGAAAAACAAAAUCAGGGAUA   1   |=|||*|||||*||||||||| targets:537   AUUUUCUGUUUGAGUCCCUAU   557 Target Full Sequence	2.5	PREDICTED: Glycine max probable serine/threonine-protein kinase At1g54610 (LOC100817858), mRNA	probable serine/threonine-protein kinase At1g54610(LOC100817858)	coding protein	psRNATarget
XM_003516679.3	ncRNA:21   UGAAAAACAAAAUCAGGGAUA   1   |=|||*|||||*||||||||| targets:391   AUUUUCUGUUUGAGUCCCUAU   411 Target Full Sequence	2.5	PREDICTED: Glycine max probable serine/threonine-protein kinase At1g54610 (LOC100791743), mRNA	probable serine/threonine-protein kinase At1g54610(LOC100791743)	coding protein	psRNATarget
XM_006583837.2	ncRNA:21   UGAAAAACAAAAUCAGGGAUA   1   =*||||*|||||=|||||||| targets:3710   GAUUUUGGUUUUGGUCCCUAU   3730 Target Full Sequence	2.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g09900-like (LOC100775884), transcript variant X3, mRNA	pentatricopeptide repeat-containing protein At1g09900-like(LOC100775884)	coding protein	psRNATarget
XM_006583838.2	ncRNA:21   UGAAAAACAAAAUCAGGGAUA   1   =*||||*|||||=|||||||| targets:3567   GAUUUUGGUUUUGGUCCCUAU   3587 Target Full Sequence	2.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g09900-like (LOC100775884), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At1g09900-like(LOC100775884)	coding protein	psRNATarget