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BaseInfo

ncRNA ID novel_gma_miR261
Species Glycine max
Class miRNA
Genome position Chr17:8169315-8169382 [+]
Reference genome Glycine_max_v2.0
Source SRR1451629;SRR1451648
Length 21
Mature sequence(if miRNA) 48 - CAAGAAAAUGAAUGGUGAGGA - 68
Stem-loop(if miRNA) --                           C  AU
  CUCACCAUUCAUUUUCUUGGAAUCUAA UG  A
  ||||||||||||||||||||||||||| ||  A
  GAGUGGUAAGUAAAAGAACCUUAGAUU AC  A
AG                           -  CA
Stem-loop sequence CUCACCAUUCAUUUUCUUGGAAUCUAACUGAUAAAACCAUUAGAUUCCAAGAAAAUGAAUGGUGAGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003520509.3
ncRNA:21   AGGAGUGGUAAGUAAAAGAAC   1
  *||||||*||||||||||||*
targets:2366   ACCUCACAAUUCAUUUUCUUU   2386

2.0 PREDICTED: Glycine max isoamylase 2, chloroplastic-like (LOC100797949), mRNA isoamylase 2, chloroplastic-like(LOC100797949) coding protein psRNATarget
XM_014773545.1
ncRNA:21   AGGAGUGGUAAGUAAAAGAAC   1
  *=||||||||||||*|||||*
targets:805   AUCUCACCAUUCAUCUUCUUU   825

2.5 PREDICTED: Glycine max protein NRT1/ PTR FAMILY 4.3-like (LOC106798051), mRNA protein NRT1/ PTR FAMILY 4.3-like(LOC106798051) coding protein psRNATarget
XM_014768433.1
ncRNA:21   AGGAGUGGUAAGUAAAAGAAC   1
  *||||*|||||||||||||*|
targets:155   CCCUCUCCAUUCAUUUUCUCG   175

2.5 PREDICTED: Glycine max transcription factor ICE1-like (LOC100804797), transcript variant X1, mRNA transcription factor ICE1-like(LOC100804797) coding protein psRNATarget
BT090117.1
ncRNA:21   AGGA-GUGGUAAGUAAAAGAAC   1
  ||||-||||||||||||||||*
targets:90   UCCUUCACCAUUCAUUUUCUUU   111

3.0 Soybean clone JCVI-FLGm-3N9 unknown mRNA NA coding protein psRNATarget
NM_001251455.2
ncRNA:21   AGGA-GUGGUAAGUAAAAGAAC   1
  ||||-||||||||||||||||*
targets:88   UCCUUCACCAUUCAUUUUCUUU   109

3.0 Glycine max response regulator ARR6-like (LOC100306152), mRNA uncharacterized LOC100306152(LOC100306152) coding protein psRNATarget