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BaseInfo

ncRNA ID ath-miR836
Species Arabidopsis thaliana
Class miRNA
Genome position chr2:10634280-10634616 [-]
Reference genome TAIR10
Source miRBase
Length 24
Mature sequence(if miRNA) 52 - UCCUGUGUUUCCUUUGAUGCGUGG - 75
Stem-loop(if miRNA) G          A   --UA         A            G    C          C               UA     G UAUA          -  GG  A    UU     C            C  UA                    CCUUCAACAAAAAUACCCCCCUCUU     
 CAAAGCUGCC UUU    UAGUCCAAA CUUAAAUUUCGU UUUG AAGUCUCCAC CAUCGAAGGAAACAC  GAAGA A    AUUUAUUUGA GG  AG AAUA  UGACA GGAAGCAUAGCU CA  UCCUUCAAUGGAGGUGUGGU                         GAAACU
 |||||||||| |||    ||||||||| |||||||||||| |||| |||||||||| |||||||||||||||  ||||| |    |||||||||| ||  || ||||  ||||| |||||||||||| ||  ||||||||||||||||||||                         |||||C
 GUUUUGACGG AAA    AUCGGGUUU GAAUUUAAAGCA AAAU UUCAGAGGUG GUAGUUUCCUUUGUG  CUUUU U    UAAAUAAACU CC  UC UUAU  ACUGU CCUUCGUAUCGA GU  AGGAAGUUACCUCCACACCA                         CUUUGU
-          C   UAAA         -            A    U          C               UC     G CUCG          A  AU  C    --     U            A  CC                    -------------------------     
Stem-loop sequence GCAAAGCUGCCAUUUUAUAGUCCAAAACUUAAAUUUCGUGUUUGCAAGUCUCCACCCAUCGAAGGAAACACUAGAAGAGAUAUAAUUUAUUUGAGGGGAGAAAUAUUUGACACGGAAGCAUAGCUCCAUAUCCUUCAAUGGAGGUGUGGUCCUUCAACAAAAAUACCCCCCUCUUGAAACUCUGUUUCACCACACCUCCAUUGAAGGACCUGAAGCUAUGCUUCCUUGUCAUAUUCCUUACCAUCAAAUAAAUGCUCUGUUUUCCUGUGUUUCCUUUGAUGCGUGGAGACUUUUAAAAACGAAAUUUAAGUUUGGGCUAAAAUAAACGGCAGUUUUG

Reference

1 PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana";
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
Genes Dev. 20:3407-3425(2006).