ncRNA ID | ath-miR836 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr2:10634280-10634616 [-] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 52 - UCCUGUGUUUCCUUUGAUGCGUGG - 75 |
Stem-loop(if miRNA) |
G          A   --UA         A            G    C          C               UA     G UAUA          -  GG  A    UU     C            C  UA                    CCUUCAACAAAAAUACCCCCCUCUU       CAAAGCUGCC UUU    UAGUCCAAA CUUAAAUUUCGU UUUG AAGUCUCCAC CAUCGAAGGAAACAC  GAAGA A    AUUUAUUUGA GG  AG AAUA  UGACA GGAAGCAUAGCU CA  UCCUUCAAUGGAGGUGUGGU                         GAAACU  |||||||||| |||    ||||||||| |||||||||||| |||| |||||||||| |||||||||||||||  ||||| |    |||||||||| ||  || ||||  ||||| |||||||||||| ||  ||||||||||||||||||||                         |||||C  GUUUUGACGG AAA    AUCGGGUUU GAAUUUAAAGCA AAAU UUCAGAGGUG GUAGUUUCCUUUGUG  CUUUU U    UAAAUAAACU CC  UC UUAU  ACUGU CCUUCGUAUCGA GU  AGGAAGUUACCUCCACACCA                         CUUUGU -          C   UAAA         -            A    U          C               UC     G CUCG          A  AU  C    --     U            A  CC                    -------------------------      |
Stem-loop sequence | GCAAAGCUGCCAUUUUAUAGUCCAAAACUUAAAUUUCGUGUUUGCAAGUCUCCACCCAUCGAAGGAAACACUAGAAGAGAUAUAAUUUAUUUGAGGGGAGAAAUAUUUGACACGGAAGCAUAGCUCCAUAUCCUUCAAUGGAGGUGUGGUCCUUCAACAAAAAUACCCCCCUCUUGAAACUCUGUUUCACCACACCUCCAUUGAAGGACCUGAAGCUAUGCUUCCUUGUCAUAUUCCUUACCAUCAAAUAAAUGCUCUGUUUUCCUGUGUUUCCUUUGAUGCGUGGAGACUUUUAAAAACGAAAUUUAAGUUUGGGCUAAAAUAAACGGCAGUUUUG |
1 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |