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BaseInfo

ncRNA ID novel_gma_miR253
Species Glycine max
Class miRNA
Genome position Chr1:56143049-56143135 [+]
Reference genome Glycine_max_v2.0
Source SRR1451629;SRR1451635;SRR1451650;SRR3160566;SRR3160568;SRR3160569;SRR1295527;SRR1451605;SRR1451610;SRR1451616;SRR1451621;SRR1451626
Length 24
Mature sequence(if miRNA) 1 - AUCGAGAUUGGUACCUAACUGACC - 24
Stem-loop(if miRNA) --    A    -   -      C   -    GUCA     AUAAU
  AUCG GAUU GGU ACCUAA UGA CCGG    AUUGU     C
  |||| |||| ||| |||||| ||| ||||    |||||
  UGGC CUAG CCA UGGAUU GCU GGUC    UGAUA     A
GC    C    G   C      A   A    AAAG     ACUUA
Stem-loop sequence AUCGAGAUUGGUACCUAACUGACCGGGUCAAUUGUAUAAUCAAUUCAAUAGUGAAACUGGAUCGAUUAGGUCACCGGAUCCCGGUCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003516705.3
ncRNA:24   CCAGUCAAUCCAUGGUUAGAGCUA   1
  ||||||||||||||||||||||||
targets:1876   GGUCAGUUAGGUACCAAUCUCGAU   1899

0.0 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At3g22670, mitochondrial-like (LOC100808343), mRNA pentatricopeptide repeat-containing protein At3g22670, mitochondrial-like(LOC100808343) coding protein psRNATarget