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BaseInfo

ncRNA ID	novel_gma_miR235
Species	Glycine max
Class	miRNA
Genome position	Chr14:35119461-35119611 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451629;SRR1451632;SRR1451635;SRR1451638;SRR1451641;SRR1451646;SRR1451648;SRR1451620;SRR1451625
Length	20
Mature sequence(if miRNA)	1 - UUUGGUUCUUCUUGUAUUUU - 20
Stem-loop(if miRNA)	-U    --U        -    -U    G -AA         U    GUCUAUGAGUAUGUUUCUAUGUUGUCUAGAU   UUGG   UCUUCUUG UAUU  UAUU C   UUGCUUUGC UUCA                               A   ||||   |||||||| ||||  |||| |   ||||||||| ||||   GACU   AGAAGAAC GUAG  AUAA G   GAUGGAAUG AGGU                               A AC    UCU        U    UU    G GUA         -    GACAAAAUAUCGUCGAAAAUUCAAAAAGUCG
Stem-loop sequence	UUUGGUUCUUCUUGUAUUUUAUUGCAAUUGCUUUGCUUUCAGUCUAUGAGUAUGUUUCUAUGUUGUCUAGAUAAGCUGAAAAACUUAAAAGCUGCUAUAAAACAGUGGAGUAAGGUAGAUGGGAAUAUUGAUGUCAAGAAGAUCUUCAGCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY308655.1	ncRNA:20   UUUUAUGUUCUUCUUGGUUU   1   |||||||||||||||||||| targets:263   AAAAUACAAGAAGAACCAAA   282 Target Full Sequence	0.0	Glycine max disease resistance-like KR68 pseudogene, partial sequence	NA	coding protein	psRNATarget
AF175400.1	ncRNA:20   UUUUAUGUUCUUCUUGGUUU   1   |||||||||||||||||||| targets:125   AAAAUACAAGAAGAACCAAA   144 Target Full Sequence	0.0	Glycine max resistance gene analog LM1 pseudogene, mRNA sequence	NA	coding protein	psRNATarget
XM_006588894.2	ncRNA:20   UUUUAUGUUCUUCUUGGUUU   1   **||*||||||||||||||| targets:434   CCAACACAAGAAGAACCAAA   453 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC102659985 (LOC102659985), mRNA	uncharacterized LOC102659985(LOC102659985)	coding protein	psRNATarget
GU220051.1	ncRNA:20   UUUUAUGUUCUUCUUGGUUU   1   |||||=||||*||||||||| targets:114   AAAAUGCAAGCAGAACCAAA   133 Target Full Sequence	2.5	Glycine max wrinkled 1 (WRI1) mRNA, complete cds	NA	coding protein	psRNATarget
JX515339.1	ncRNA:20   UUUUAUGUUCUUCUUGGUUU   1   |||||=||||*||||||||| targets:126   AAAAUGCAAGCAGAACCAAA   145 Target Full Sequence	2.5	Glycine max AP2/EREB-box binding protein (WRI1) mRNA, complete cds	NA	coding protein	psRNATarget
KC507817.1	ncRNA:20   UUUUAUGUUCUUCUUGGUUU   1   |||||=||||*||||||||| targets:120   AAAAUGCAAGCAGAACCAAA   139 Target Full Sequence	2.5	Glycine max AP2/EREB-box binding protein (WRI1a) mRNA, complete cds	NA	coding protein	psRNATarget
XM_006596923.2	ncRNA:20   UUUUAUGUUCUUCUUGGUUU   1   |||||=||||*||||||||| targets:324   AAAAUGCAAGCAGAACCAAA   343 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100527432 (WRI1), transcript variant X2, mRNA	uncharacterized LOC100527432(WRI1)	coding protein	psRNATarget
XM_006596924.2	ncRNA:20   UUUUAUGUUCUUCUUGGUUU   1   |||||=||||*||||||||| targets:631   AAAAUGCAAGCAGAACCAAA   650 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100527432 (WRI1), transcript variant X3, mRNA	uncharacterized LOC100527432(WRI1)	coding protein	psRNATarget
XM_014767329.1	ncRNA:20   UUUUAUGUUCUUCUUGGUUU   1   |||||=||||*||||||||| targets:631   AAAAUGCAAGCAGAACCAAA   650 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100527432 (WRI1), transcript variant X1, mRNA	uncharacterized LOC100527432(WRI1)	coding protein	psRNATarget
XM_006585633.2	ncRNA:20   UUUUAUGUUCUUCUUGGUUU   1   |||||=||||*||||||||| targets:625   AAAAUGCAAGCAGAACCAAA   644 Target Full Sequence	2.5	PREDICTED: Glycine max ethylene-responsive transcription factor WRI1-like (LOC100789774), mRNA	ethylene-responsive transcription factor WRI1-like(LOC100789774)	coding protein	psRNATarget
XM_006581017.2	ncRNA:20   UUUUAUGUUCUUCUUGGUUU   1   |||||=*||||||||||||= targets:1483   AAAAUGGAAGAAGAACCAAG   1502 Target Full Sequence	3.0	PREDICTED: Glycine max protein LAZ1-like (LOC100777624), transcript variant X1, mRNA	protein LAZ1-like(LOC100777624)	coding protein	psRNATarget
XM_006581018.2	ncRNA:20   UUUUAUGUUCUUCUUGGUUU   1   |||||=*||||||||||||= targets:1488   AAAAUGGAAGAAGAACCAAG   1507 Target Full Sequence	3.0	PREDICTED: Glycine max protein LAZ1-like (LOC100777624), transcript variant X2, mRNA	protein LAZ1-like(LOC100777624)	coding protein	psRNATarget
XM_006584770.2	ncRNA:20   UUUUAUGUUCUUCUUGGUUU   1   **|=|||||||||||||||* targets:406   UCAGUACAAGAAGAACCAAC   425 Target Full Sequence	3.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At5g21222 (LOC100809945), transcript variant X4, mRNA	pentatricopeptide repeat-containing protein At5g21222(LOC100809945)	coding protein	psRNATarget
XM_006584771.2	ncRNA:20   UUUUAUGUUCUUCUUGGUUU   1   **|=|||||||||||||||* targets:453   UCAGUACAAGAAGAACCAAC   472 Target Full Sequence	3.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At5g21222 (LOC100809945), transcript variant X5, mRNA	pentatricopeptide repeat-containing protein At5g21222(LOC100809945)	coding protein	psRNATarget
XM_006584772.2	ncRNA:20   UUUUAUGUUCUUCUUGGUUU   1   **|=|||||||||||||||* targets:468   UCAGUACAAGAAGAACCAAC   487 Target Full Sequence	3.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At5g21222 (LOC100809945), transcript variant X6, mRNA	pentatricopeptide repeat-containing protein At5g21222(LOC100809945)	coding protein	psRNATarget
XM_014778673.1	ncRNA:20   UUUUAUGUUCUUCUUGGUUU   1   **|=|||||||||||||||* targets:480   UCAGUACAAGAAGAACCAAC   499 Target Full Sequence	3.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At5g21222 (LOC100809945), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At5g21222(LOC100809945)	coding protein	psRNATarget
XM_014778674.1	ncRNA:20   UUUUAUGUUCUUCUUGGUUU   1   **|=|||||||||||||||* targets:529   UCAGUACAAGAAGAACCAAC   548 Target Full Sequence	3.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At5g21222 (LOC100809945), transcript variant X3, mRNA	pentatricopeptide repeat-containing protein At5g21222(LOC100809945)	coding protein	psRNATarget
XM_006584769.2	ncRNA:20   UUUUAUGUUCUUCUUGGUUU   1   **|=|||||||||||||||* targets:594   UCAGUACAAGAAGAACCAAC   613 Target Full Sequence	3.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At5g21222 (LOC100809945), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At5g21222(LOC100809945)	coding protein	psRNATarget
XM_014778675.1	ncRNA:20   UUUUAUGUUCUUCUUGGUUU   1   **|=|||||||||||||||* targets:643   UCAGUACAAGAAGAACCAAC   662 Target Full Sequence	3.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At5g21222 (LOC100809945), transcript variant X7, mRNA	pentatricopeptide repeat-containing protein At5g21222(LOC100809945)	coding protein	psRNATarget