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BaseInfo

ncRNA ID novel_gma_miR227
Species Glycine max
Class miRNA
Genome position Chr13:27694050-27694147 [+]
Reference genome Glycine_max_v2.0
Source SRR1451629;SRR1451635;SRR1451646;SRR1451650;SRR1451605;SRR1451608;SRR1451617;SRR1451620
Length 24
Mature sequence(if miRNA) 1 - UAUGAAUUGUCAAUCUGUAUGAAU - 24
Stem-loop(if miRNA) --  UG     -   A          UUAUA   A   U    C      
  UA  AAUUG UCA UCUGUAUGAA     UGA UUG UAAU CGUAUGA
  ||  ||||| ||| ||||||||||     ||| ||| |||| ||||||U
  AU  UUAAC AGU AGGCAUAUUU     ACU AAC AUUA GCAUACU
AU  GU     U   -          UAAUG   -   U    A      
Stem-loop sequence UAUGAAUUGUCAAUCUGUAUGAAUUAUAUGAAUUGUUAAUCCGUAUGAUUCAUACGAAUUAUCAAUCAGUAAUUUUAUACGGAUGAUCAAUUUGUAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003549772.3
ncRNA:24   UAAGUAUGU-CUAACUGUUAAGUAU   1
  ||*|=||||-|*|||||||||||||
targets:2214   AUACGUACAUGCUUGACAAUUCAUA   2238

3.0 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At3g48250, chloroplastic-like (LOC100801257), mRNA pentatricopeptide repeat-containing protein At3g48250, chloroplastic-like(LOC100801257) coding protein psRNATarget