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BaseInfo

ncRNA ID novel_gma_miR216
Species Glycine max
Class miRNA
Genome position Chr18:23392570-23392758 [-]
Reference genome Glycine_max_v2.0
Source SRR1294478;SRR1294479;SRR2045231;SRR1294477
Length 24
Mature sequence(if miRNA) 166 - AUGUGUAAUUUUCUGUCUGGUUCC - 189
Stem-loop(if miRNA) --            --C    U     -CCCAUUCCAAACA       AAACAUGC       ----     CACAAAA     -- -      U  GAC     
  AUGUGUAAUUUU   UGUC GGUUC              UAUUUUG        UUGGGUU    GCAUC       CGUCA  C CAUCAA UG   CAGACC
  ||||||||||||   |||| |||||              |||||||        |||||||    |||||       |||||  | |||||| ||   |||||U
  UACAUAUUAAAA   GCAG UCAAG              AUAAAAC        AACCUAG    CGUAG       GCAGU  G GUAGUU AU   GUUUGA
CA            AUA    -     UAACAUAAAAUAAA       --------       UUAC     --AAGCA     AC A      C  -AU     
Stem-loop sequence AUGUGUAAUUUUCUGUCUGGUUCCCCAUUCCAAACAUAUUUUGAAACAUGCUUGGGUUGCAUCCACAAAACGUCACCAUCAAUUGGACCAGACCUAGUUUGUAUACUUGAUGAGCAUGACGACGAAGAUGCCAUUGAUCCAACAAAAUAAAAUAAAAUACAAUGAACUGACGAUAAAAAUUAUACAUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014770773.1
ncRNA:24   CCUUGGUCUGUCUUUUAAUGUGUA   1
  |||||||||=||||||||||||||
targets:129   GGAACCAGAUAGAAAAUUACACAU   152

1.0 PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC106797069), mRNA serine/threonine-protein phosphatase 7 long form homolog(LOC106797069) coding protein psRNATarget
XM_006578263.2
ncRNA:24   CCUUGGUCUGUCUUUUAAUGUGUA   1
  |||||||||=||||||||||||||
targets:901   GGAACCAGAUAGAAAAUUACACAU   924

1.0 PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC102659618), mRNA serine/threonine-protein phosphatase 7 long form homolog(LOC102659618) coding protein psRNATarget
XM_006600889.2
ncRNA:24   CCUUGGUCUGUCUUUUAAUGUGUA   1
  |||||||||=||||||||||||||
targets:129   GGAACCAGAUAGAAAAUUACACAU   152

1.0 PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC102666222), mRNA serine/threonine-protein phosphatase 7 long form homolog(LOC102666222) coding protein psRNATarget
XM_014764660.1
ncRNA:24   CCUUGGUCUGUCUUUUAAUGUGUA   1
  ||||||||||||||||*|||||||
targets:318   GGAACCAGACAGAAAACUACACAU   341

1.5 PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC102666932), mRNA serine/threonine-protein phosphatase 7 long form homolog(LOC102666932) coding protein psRNATarget
XM_014772472.1
ncRNA:24   CCUUGGUCUGUCUUUUAAUGUGUA   1
  *|||*|||||||||||*|||||||
targets:111   AGAAGCAGACAGAAAACUACACAU   134

1.5 PREDICTED: Glycine max uncharacterized LOC106797646 (LOC106797646), mRNA uncharacterized LOC106797646(LOC106797646) coding protein psRNATarget
XM_014776675.1
ncRNA:24   CCUUGGUCUGUCUUUUAAUGUGUA   1
  |||||||||=|||||||||||=||
targets:685   GGAACCAGAUAGAAAAUUACAUAU   708

2.5 PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC100790217), mRNA serine/threonine-protein phosphatase 7 long form homolog(LOC100790217) coding protein psRNATarget
XM_006579970.2
ncRNA:24   CCUUGGUCUGUCUUUUAAUGUGUA   1
  |||||||||=|||||||||||=||
targets:309   GGAACCAGAUAGAAAAUUACAUAU   332

2.5 PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC100782801), mRNA serine/threonine-protein phosphatase 7 long form homolog(LOC100782801) coding protein psRNATarget
XM_014766295.1
ncRNA:24   CCUUGGUCUGUCUUUUAAUGUGUA   1
  |||||||||=|||||||||||=||
targets:843   GGAACCAGAUAGAAAAUUACAUAU   866

2.5 PREDICTED: Glycine max uncharacterized LOC106794312 (LOC106794312), mRNA uncharacterized LOC106794312(LOC106794312) coding protein psRNATarget
XM_014771675.1
ncRNA:24   CCUUGGUCUGUCUUUUAAUGUGUA   1
  |||||||||=|||||||||||=||
targets:685   GGAACCAGAUAGAAAAUUACAUAU   708

2.5 PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC106794141), mRNA serine/threonine-protein phosphatase 7 long form homolog(LOC106794141) coding protein psRNATarget
XM_006594783.2
ncRNA:24   CCUUGGUCUGUCUUUUAAUGUGUA   1
  |||||||||=|||||||||||=||
targets:667   GGAACCAGAUAGAAAAUUACAUAU   690

2.5 PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC102670395), mRNA serine/threonine-protein phosphatase 7 long form homolog(LOC102670395) coding protein psRNATarget
XM_003530331.3
ncRNA:24   CCUUGGUCUGUCUUUUAAUGUGUA   1
  ||=|*||||=|*||||||||||||
targets:1572   GGGAGCAGAUAAAAAAUUACACAU   1595

2.5 PREDICTED: Glycine max probable WRKY transcription factor 41 (LOC100127375), mRNA probable WRKY transcription factor 41(LOC100127375) coding protein psRNATarget
XM_006579748.2
ncRNA:24   CCUUGGUCUGUCUUUUAAUGUGUA   1
  *|||*|*|||||||||*|||||||
targets:121   AGAAGCCGACAGAAAACUACACAU   144

2.5 PREDICTED: Glycine max uncharacterized LOC102667770 (LOC102667770), transcript variant X2, mRNA uncharacterized LOC102667770(LOC102667770) coding protein psRNATarget
XM_006579747.2
ncRNA:24   CCUUGGUCUGUCUUUUAAUGUGUA   1
  *|||*|*|||||||||*|||||||
targets:121   AGAAGCCGACAGAAAACUACACAU   144

2.5 PREDICTED: Glycine max uncharacterized LOC102667770 (LOC102667770), transcript variant X1, mRNA uncharacterized LOC102667770(LOC102667770) coding protein psRNATarget
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