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BaseInfo

ncRNA ID novel_gma_miR205
Species Glycine max
Class miRNA
Genome position Chr8:47704169-47704250 [+]
Reference genome Glycine_max_v2.0
Source SRR1451628
Length 21
Mature sequence(if miRNA) 1 - CCCUCAAAGGCUUCCAGUAUU - 21
Stem-loop(if miRNA) --  C        U          CCGU   C    AUAUAU
  CC UCAAAGGC UCCAGUAUUC    AUU AUUC      A
  || |||||||| ||||||||||    ||| ||||      C
  GG AGUUUCUG AGGUCGUAAG    UAG UAAG      C
AA  A        U          ---U   U    AUCGAU
Stem-loop sequence CCCUCAAAGGCUUCCAGUAUUCCCGUAUUCAUUCAUAUAUACCUAGCUAGAAUUGAUUGAAUGCUGGAUGUCUUUGAAGGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003525617.3
ncRNA:21   UUAUGACCUUCGGAAACUCCC   1
  ||||=||||||||||||||||
targets:952   AAUAUUGGAAGCCUUUGAGGG   972

1.0 PREDICTED: Glycine max scarecrow-like protein 21 (LOC100815959), mRNA scarecrow-like protein 21(LOC100815959) coding protein psRNATarget
XM_003550815.3
ncRNA:21   UUAUGACCUUCGGAAACUCCC   1
  |=||=||||||||||||||||
targets:777   AGUAUUGGAAGCCUUUGAGGG   797

1.0 PREDICTED: Glycine max scarecrow-like protein 21 (LOC100813548), mRNA scarecrow-like protein 21(LOC100813548) coding protein psRNATarget
XM_006592868.2
ncRNA:21   UUAUGACCUUCGGAAACUCCC   1
  =|*||||||||||||||||||
targets:2998   GACACUGGAAGCCUUUGAGGG   3018

1.0 PREDICTED: Glycine max TPR repeat-containing thioredoxin TTL1-like (LOC100804531), mRNA TPR repeat-containing thioredoxin TTL1-like(LOC100804531) coding protein psRNATarget