ncRNA ID | bra-miR167b |
Species | Brassica rapa |
Class | miRNA |
Genome position | chrA1:19998656-19998787 [-] |
Reference genome | Brapa_1.1 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 95 - UGAAGCUGCCAGCAUGAUCUA - 115 |
Stem-loop(if miRNA) |
     -    G  UCU A         C             UA  U   UU     GUUGA      G GGUGU ACAG CA   G UGAAGCUGC AGCAUGAUCUAAU  AC UUC  UCUCU     UUUUAU A ||||| |||| ||   | ||||||||| |||||||||||||  || |||  |||||     |||||| CCACG UGUC GU   C ACUUUGACG UUGUACUAGAUUA  UG GAG  AGAGA     AAGGUA C      C    A  UAC C         C             GC  U   -U     ----A      A |
Stem-loop sequence | GGUGUACAGGCAUCUGAUGAAGCUGCCAGCAUGAUCUAAUUAACUUUCUUUCUCUGUUGAUUUUAUGACAAUGGAAAAGAGAUGAGUGUCGAUUAGAUCAUGUUCGCAGUUUCACCCAUUGACUGUCGCACC |
1 | PMID:18558089
"Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"; He XF, Fang YY, Feng L, Guo HS; FEBS Lett. 582:2445-2452(2008). |
2 | PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014). |