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BaseInfo

ncRNA ID bra-miR167b
Species Brassica rapa
Class miRNA
Genome position chrA1:19998656-19998787 [-]
Reference genome Brapa_1.1
Source miRBase
Length 21
Mature sequence(if miRNA) 95 - UGAAGCUGCCAGCAUGAUCUA - 115
Stem-loop(if miRNA)      -    G  UCU A         C             UA  U   UU     GUUGA      G
GGUGU ACAG CA   G UGAAGCUGC AGCAUGAUCUAAU  AC UUC  UCUCU     UUUUAU A
||||| |||| ||   | ||||||||| |||||||||||||  || |||  |||||     ||||||
CCACG UGUC GU   C ACUUUGACG UUGUACUAGAUUA  UG GAG  AGAGA     AAGGUA C
     C    A  UAC C         C             GC  U   -U     ----A      A
Stem-loop sequence GGUGUACAGGCAUCUGAUGAAGCUGCCAGCAUGAUCUAAUUAACUUUCUUUCUCUGUUGAUUUUAUGACAAUGGAAAAGAGAUGAGUGUCGAUUAGAUCAUGUUCGCAGUUUCACCCAUUGACUGUCGCACC

Reference

1 PMID:18558089
"Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica";
He XF, Fang YY, Feng L, Guo HS;
FEBS Lett. 582:2445-2452(2008).
2 PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis";
Jiang J, Lv M, Liang Y, Ma Z, Cao J;
BMC Genomics. 15:146(2014).