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BaseInfo

ncRNA ID novel_gma_miR202
Species Glycine max
Class miRNA
Genome position Chr8:3896600-3896711 [+]
Reference genome Glycine_max_v2.0
Source SRR1451628;SRR1451636;SRR835762;DRR031984;SRR1451612;SRR1451615;SRR1451621
Length 21
Mature sequence(if miRNA) 92 - GCUCUCUAUACUUCUGUCAUC - 112
Stem-loop(if miRNA) --         -              U  -   U       ---------U  UAUAAUAU
  UGACAGAAG AUAGAGAGCACAGA GA UGA AUGCAUA          UA        A
  ||||||||| |||||||||||||| || ||| |||||||          ||        U
  ACUGUCUUC UAUCUCUCGUGUUU CU AUU UACGUGU          UC        A
CU         A              C  C   C       UAAGUAGUAC  AAGGGACG
Stem-loop sequence UGACAGAAGAUAGAGAGCACAGAUGAUGAUAUGCAUAUUAUAUAAUAUAUAGCAGGGAACUCAUGAUGAAUUGUGCAUCUUACUCCUUUGUGCUCUCUAUACUUCUGUCAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014774400.1
ncRNA:21   CUACUGUCUUCAUAUCUCUCG   1
  |=|||||||=|||||||||||
targets:3468   GGUGACAGAGGUAUAGAGAGC   3488

1.5 PREDICTED: Glycine max probable LRR receptor-like serine/threonine-protein kinase At2g16250 (LOC100805769), mRNA probable LRR receptor-like serine/threonine-protein kinase At2g16250(LOC100805769) coding protein psRNATarget
NM_001251353.2
ncRNA:21   CUACUGUCUUCAUAUCUCUCG   1
  *|||*|||=||||||||||||
targets:530   UAUGUCAGGAGUAUAGAGAGC   550

2.5 Glycine max uncharacterized LOC100527585 (LOC100527585), mRNA uncharacterized LOC100527585(LOC100527585) coding protein psRNATarget
BT092436.1
ncRNA:21   CUACUGUCUUCAUAUCUCUCG   1
  *|||*|||=||||||||||||
targets:532   UAUGUCAGGAGUAUAGAGAGC   552

2.5 Soybean clone JCVI-FLGm-10N20 unknown mRNA NA coding protein psRNATarget