Search result

BaseInfo

ncRNA ID novel_gma_miR194
Species Glycine max
Class miRNA
Genome position Chr7:35656903-35656994 [+]
Reference genome Glycine_max_v2.0
Source SRR1451628;SRR1451634;SRR1451639;SRR1451642;SRR2045232;SRR3067738;SRR835758;SRR835759;SRR835761;SRR835762;SRR835763;SRR835765;SRR835766;SRR835767;SRR835768;SRR835770;SRR835771;SRR835773;SRR1295531;SRR1451612;SRR1451613;SRR1451614;SRR1451615;SRR1451616;SRR1451617;SRR1451618;SRR1451619;SRR1451620;SRR1451621;SRR1451622;SRR1451623;SRR1451624
Length 21
Mature sequence(if miRNA) 1 - UCAUUGAGUGUAGCAUUGAUG - 21
Stem-loop(if miRNA) --UC            A       -   UU    --------CU     C
    AUUGAGUGUAGC UUGAUGA AGU  CACU          CAUCU A
    |||||||||||| ||||||| |||  ||||          ||||| G
    UAACUCACGUCG AGCUACU UUA  GUGG          GUAGA A
GUAC            C       A   UU    UAUUUAAUUC     U
Stem-loop sequence UCAUUGAGUGUAGCAUUGAUGAAGUUUCACUCUCAUCUCAGAUAGAUGCUUAAUUUAUGGUGUUAUUAUCAUCGACGCUGCACUCAAUCAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003551251.1
ncRNA:21   GUAGUUACGAUGUGAGUUACU   1
  ||||||||||=||||||||||
targets:737   CAUCAAUGCUGCACUCAAUGA   757

1.5 PREDICTED: Glycine max laccase-4 (LOC100782018), mRNA laccase-4(LOC100782018) coding protein psRNATarget
AK244949.1
ncRNA:21   GUAGUUACGAUGUGAGUUACU   1
  ||||||||||=||||||||||
targets:738   CAUCAAUGCUGCACUCAAUGA   758

1.5 Glycine max cDNA, clone: GMFL01-17-J19 NA coding protein psRNATarget
XM_003539910.3
ncRNA:21   GUAGUUACGAUGUGAGUUACU   1
  ||||||||||=||||||||||
targets:732   CAUCAAUGCUGCACUCAAUGA   752

1.5 PREDICTED: Glycine max laccase-4-like (LOC100785096), mRNA laccase-4-like(LOC100785096) coding protein psRNATarget
XM_014770381.1
ncRNA:21   GUAGUUACGAUGUGAGUUACU   1
  ||||||||||=||||||||||
targets:776   CAUCAAUGCUGCACUCAAUGA   796

1.5 PREDICTED: Glycine max laccase-4-like (LOC100806257), transcript variant X2, mRNA laccase-4-like(LOC100806257) coding protein psRNATarget
XM_006602579.2
ncRNA:21   GUAGUUACGAUGUGAGUUACU   1
  ||||||||||=||||||||||
targets:777   CAUCAAUGCUGCACUCAAUGA   797

1.5 PREDICTED: Glycine max laccase-4-like (LOC100806257), transcript variant X1, mRNA laccase-4-like(LOC100806257) coding protein psRNATarget
XM_014770382.1
ncRNA:21   GUAGUUACGAUGUGAGUUACU   1
  ||||||||||=||||||||||
targets:777   CAUCAAUGCUGCACUCAAUGA   797

1.5 PREDICTED: Glycine max laccase-4-like (LOC100806257), transcript variant X3, mRNA laccase-4-like(LOC100806257) coding protein psRNATarget
BT098515.1
ncRNA:21   GUAGUUACGAUGUGAGUUACU   1
  =|||||||||=||||||||||
targets:723   UAUCAAUGCUGCACUCAAUGA   743

1.5 Soybean clone JCVI-FLGm-16L15 unknown mRNA NA coding protein psRNATarget
XM_003522102.3
ncRNA:21   GUAGUUACGAUGUGAGUUACU   1
  =|||||||||=||||||||||
targets:745   UAUCAAUGCUGCACUCAAUGA   765

1.5 PREDICTED: Glycine max laccase-4-like (LOC100797234), mRNA laccase-4-like(LOC100797234) coding protein psRNATarget
XM_003520893.3
ncRNA:21   GUAGUUACGAUGUGAGUUACU   1
  =|||||||||=||||||||||
targets:917   UAUCAAUGCUGCACUCAAUGA   937

1.5 PREDICTED: Glycine max laccase-7-like (LOC100812336), mRNA laccase-7-like(LOC100812336) coding protein psRNATarget
XM_014779029.1
ncRNA:21   GUAGUUACGAUGUGAGUUACU   1
  =|||||||||=||||||||||
targets:708   UAUCAAUGCUGCACUCAAUGA   728

1.5 PREDICTED: Glycine max laccase-7 (LOC100792259), mRNA laccase-7(LOC100792259) coding protein psRNATarget
XM_006603431.2
ncRNA:21   GUAGUUACGAUGUGAGUUACU   1
  *|||||||||=||||||||||
targets:459   GAUCAAUGCUGCACUCAAUGA   479

1.5 PREDICTED: Glycine max laccase-17-like (LOC100819074), partial mRNA laccase-17-like(LOC100819074) coding protein psRNATarget
XM_003552112.3
ncRNA:21   GUAGUUACGAUGUGAGUUACU   1
  *|||||||||=||||||||||
targets:762   GAUCAAUGCUGCACUCAAUGA   782

1.5 PREDICTED: Glycine max laccase-17-like (LOC100813570), mRNA laccase-17-like(LOC100813570) coding protein psRNATarget
XM_006590918.2
ncRNA:21   GUAGUUACGAUGUGAGUUACU   1
  *|||||||||=||||||||||
targets:792   GAUCAAUGCUGCACUCAAUGA   812

1.5 PREDICTED: Glycine max laccase-2-like (LOC100792688), mRNA laccase-2-like(LOC100792688) coding protein psRNATarget
XM_006592126.2
ncRNA:21   GUAGUUACGAUGUGAGUUACU   1
  *|||||||||=||||||||||
targets:784   GAUCAAUGCUGCACUCAAUGA   804

1.5 PREDICTED: Glycine max laccase-2-like (LOC100811833), mRNA laccase-2-like(LOC100811833) coding protein psRNATarget
XM_003516893.3
ncRNA:21   GUAGUUACGAUGUGAGUUACU   1
  ==||||||||=||||||||||
targets:742   UGUCAAUGCUGCACUCAAUGA   762

1.5 PREDICTED: Glycine max laccase-4-like (LOC100779825), mRNA laccase-4-like(LOC100779825) coding protein psRNATarget
XM_014778293.1
ncRNA:21   GUAGUUACGAUGUGAG-UUACU   1
  |=||||||||||||||-|||||
targets:45   CGUCAAUGCUACACUCCAAUGA   66

3.0 PREDICTED: Glycine max probable leucine-rich repeat receptor-like protein kinase At5g49770 (LOC100811702), transcript variant X3, mRNA probable leucine-rich repeat receptor-like protein kinase At5g49770(LOC100811702) coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.