| ncRNA ID | bra-miR9555b-3p |
| Species | Brassica rapa |
| Class | miRNA |
| Genome position | chrA1:12276529-12276741 [-] |
| Reference genome | Brapa_1.1 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 61 - UUAGAAACUUGCAAUUAUAUA - 81 |
| Stem-loop(if miRNA) |
AUAUUAUU A C A C AU UA G C UAA UC GGGG UUUCUUGCUC UAG UU UUAAAAUACAUGUAUGUAUAUGUAUAU UAUAUAUG UAUGUAAUUGCGGG UUCUAAGCUUUA GG GAAACUU G |||| |||||||||| ||| || ||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| || ||||||| CCCC AAAGAACGAG AUC AA AAUUUUAUGUACAUACAUAUAUAUAUA AUAUAUAC AUAUAUUAACGUUC AAGAUUUGAAAU CC CUUUGGG G -------C - A C A -- GC A A --- UU |
| Stem-loop sequence | AUAUUAUUGGGGAUUUCUUGCUCCUAGAUUCUUAAAAUACAUGUAUGUAUAUGUAUAUAUUAUAUAUGUAUAUGUAAUUGCGGGGUUCUAAGCUUUACGGUAAGAAACUUUCGGUUGGGUUUCCCAUAAAGUUUAGAAACUUGCAAUUAUAUACGCAUAUAUAAUAUAUAUAUACAUACAUGUAUUUUAAAAACCUAAGAGCAAGAAACCCCC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_009153649.2 |
|
2.5 | PREDICTED: Brassica rapa WAT1-related protein At5g40210 (LOC103875169), mRNA | WAT1-related protein At5g40210(LOC103875169) | coding protein | psRNATarget |
| 1 | PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014). |