ncRNA ID | bra-miR9555b-5p |
Species | Brassica rapa |
Class | miRNA |
Genome position | chrA1:12276529-12276741 [-] |
Reference genome | Brapa_1.1 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 121 - UGUAAUUGCGGGGUUCUAAGC - 141 |
Stem-loop(if miRNA) |
AUAUUAUU    A          C   A  C                           AU        UA              G            C  UAA       UC         GGGG UUUCUUGCUC UAG UU UUAAAAUACAUGUAUGUAUAUGUAUAU  UAUAUAUG  UAUGUAAUUGCGGG UUCUAAGCUUUA GG   GAAACUU  G         |||| |||||||||| ||| || |||||||||||||||||||||||||||  ||||||||  |||||||||||||| |||||||||||| ||   |||||||         CCCC AAAGAACGAG AUC AA AAUUUUAUGUACAUACAUAUAUAUAUA  AUAUAUAC  AUAUAUUAACGUUC AAGAUUUGAAAU CC   CUUUGGG  G -------C    -          A   C  A                           --        GC              A            A  ---       UU |
Stem-loop sequence | AUAUUAUUGGGGAUUUCUUGCUCCUAGAUUCUUAAAAUACAUGUAUGUAUAUGUAUAUAUUAUAUAUGUAUAUGUAAUUGCGGGGUUCUAAGCUUUACGGUAAGAAACUUUCGGUUGGGUUUCCCAUAAAGUUUAGAAACUUGCAAUUAUAUACGCAUAUAUAAUAUAUAUAUACAUACAUGUAUUUUAAAAACCUAAGAGCAAGAAACCCCC |
1 | PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014). |