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BaseInfo

ncRNA ID bra-miR9555b-5p
Species Brassica rapa
Class miRNA
Genome position chrA1:12276529-12276741 [-]
Reference genome Brapa_1.1
Source miRBase
Length 21
Mature sequence(if miRNA) 121 - UGUAAUUGCGGGGUUCUAAGC - 141
Stem-loop(if miRNA) AUAUUAUU    A          C   A  C                           AU        UA              G            C  UAA       UC
        GGGG UUUCUUGCUC UAG UU UUAAAAUACAUGUAUGUAUAUGUAUAU  UAUAUAUG  UAUGUAAUUGCGGG UUCUAAGCUUUA GG   GAAACUU  G
        |||| |||||||||| ||| || |||||||||||||||||||||||||||  ||||||||  |||||||||||||| |||||||||||| ||   |||||||
        CCCC AAAGAACGAG AUC AA AAUUUUAUGUACAUACAUAUAUAUAUA  AUAUAUAC  AUAUAUUAACGUUC AAGAUUUGAAAU CC   CUUUGGG  G
-------C    -          A   C  A                           --        GC              A            A  ---       UU
Stem-loop sequence AUAUUAUUGGGGAUUUCUUGCUCCUAGAUUCUUAAAAUACAUGUAUGUAUAUGUAUAUAUUAUAUAUGUAUAUGUAAUUGCGGGGUUCUAAGCUUUACGGUAAGAAACUUUCGGUUGGGUUUCCCAUAAAGUUUAGAAACUUGCAAUUAUAUACGCAUAUAUAAUAUAUAUAUACAUACAUGUAUUUUAAAAACCUAAGAGCAAGAAACCCCC

Reference

1 PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis";
Jiang J, Lv M, Liang Y, Ma Z, Cao J;
BMC Genomics. 15:146(2014).