| ncRNA ID | bra-miR9408-3p |
| Species | Brassica rapa |
| Class | miRNA |
| Genome position | chrA1:9651914-9652053 [-] |
| Reference genome | Brapa_1.1 |
| Source | miRBase |
| Length | 22 |
| Mature sequence(if miRNA) | 19 - UUUCAUCUUAGAGAAUGUUGUU - 40 |
| Stem-loop(if miRNA) |
ACA UU -C G - G U ---AA C UC ACGAG UUG UUAAGACAACA UCUC AGGAUGGAAAAUGCUUUU ACUUA GU C GUGA A ||||| ||| ||||||||||| |||| |||||||||||||||||| ||||| || | |||| A UGCUU AAC AGUUUUGUUGU AGAG UUCUACUUUUUAUGAAAA UGAAU CA G CGCU A ACC -U CA A A A - AAACC A CU |
| Stem-loop sequence | ACAACGAGUUUUGCUUAAGACAACAGUCUCAGGAUGGAAAAUGCUUUUGACUUAUGUAACCGUGAUCAAAUCUCGCAGCCAAAACUAAGUAAAAAGUAUUUUUCAUCUUAGAGAAUGUUGUUUUGAACCAAUUUCGUCCA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_009138557.1 |
|
2.5 | PREDICTED: Brassica rapa cysteine-rich receptor-like protein kinase 24 (LOC103860870), transcript variant X2, mRNA | cysteine-rich receptor-like protein kinase 24(LOC103860870) | coding protein | psRNATarget | |||||||||
| XM_009138549.1 |
|
2.5 | PREDICTED: Brassica rapa cysteine-rich receptor-like protein kinase 24 (LOC103860870), transcript variant X1, mRNA | cysteine-rich receptor-like protein kinase 24(LOC103860870) | coding protein | psRNATarget | |||||||||
| XM_009134782.1 |
|
2.5 | PREDICTED: Brassica rapa uncharacterized LOC103857574 (LOC103857574), mRNA | uncharacterized LOC103857574(LOC103857574) | coding protein | psRNATarget |
| 1 | PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014). |