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BaseInfo

ncRNA ID	bra-miR9408-5p
Species	Brassica rapa
Class	miRNA
Genome position	chrA1:9651914-9652053 [-]
Reference genome	Brapa_1.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	100 - CAACAGUCUCAGGAUGGAAAA - 120
Stem-loop(if miRNA)	ACA     UU   -C           G    -                  G     U  ---AA C    UC    ACGAG  UUG  UUAAGACAACA UCUC AGGAUGGAAAAUGCUUUU ACUUA GU     C GUGA  A    |||||  |||  ||||||||||| |||| |||||||||||||||||| ||||| ||     | ||||  A    UGCUU  AAC  AGUUUUGUUGU AGAG UUCUACUUUUUAUGAAAA UGAAU CA     G CGCU  A ACC     -U   CA           A    A                  A     -  AAACC A    CU
Stem-loop sequence	ACAACGAGUUUUGCUUAAGACAACAGUCUCAGGAUGGAAAAUGCUUUUGACUUAUGUAACCGUGAUCAAAUCUCGCAGCCAAAACUAAGUAAAAAGUAUUUUUCAUCUUAGAGAAUGUUGUUUUGAACCAAUUUCGUCCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AB300319.1	ncRNA:21   AAAAGGUAGGACUCUGACAAC   1   |||||=|||||||||=||||| targets:300   UUUUCUAUCCUGAGAUUGUUG   320 Target Full Sequence	2.5	Brassica rapa BcSep15 mRNA for putative 15kDa selenoprotein, complete cds	NA	coding protein	psRNATarget
NM_001301967.1	ncRNA:21   AAAAGGUAGGACUCUGACAAC   1   |||||=|||||||||=||||| targets:300   UUUUCUAUCCUGAGAUUGUUG   320 Target Full Sequence	2.5	Brassica rapa 15 kDa selenoprotein (LOC103836514), mRNA	15 kDa selenoprotein(LOC103836514)	coding protein	psRNATarget
XM_009111381.2	ncRNA:21   AAAAGGUAGGACUCUGACAAC   1   |**|||=*||||||||||||| targets:1728   UACUCCGCCCUGAGACUGUUG   1748 Target Full Sequence	3.0	PREDICTED: Brassica rapa mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3-like (LOC103835247), mRNA	mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3-like(LOC103835247)	coding protein	psRNATarget

Reference

1	PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014).