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BaseInfo

ncRNA ID novel_gma_miR152
Species Glycine max
Class miRNA
Genome position Chr2:9422886-9422963 [+]
Reference genome Glycine_max_v2.0
Source SRR1451628;SRR1451629;SRR1451630;SRR1451633;SRR1451635;SRR1451640;SRR1451642;SRR1451643;SRR1451644;SRR1451646;SRR1451647;SRR1451648;SRR3067738
Length 21
Mature sequence(if miRNA) 1 - GAUGUGUUUGUUUUGUUUUUC - 21
Stem-loop(if miRNA) --                                 C  U
  GAUGUGUUUGUUUUGUUUUUCAUCCUUGAAGUG UU A
  ||||||||||||||||||||||||||||||||| || G
  UUACACAAACAAAACAAAAAGUAGGAAUUUCAU AA A
UU                                 -  U
Stem-loop sequence GAUGUGUUUGUUUUGUUUUUCAUCCUUGAAGUGCUUUAGAUAAUACUUUAAGGAUGAAAAACAAAACAAACACAUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006581675.2
ncRNA:21   CUUUUUGUUUUGUUUGUGUAG   1
  **||||||||||||||*||||
targets:102   ACAAAACAAAACAAACCCAUC   122

1.5 PREDICTED: Glycine max protein MIZU-KUSSEI 1-like (LOC100792553), mRNA protein MIZU-KUSSEI 1-like(LOC100792553) coding protein psRNATarget
XM_003527699.3
ncRNA:21   CUUUUUGUUUUGUUUGUGUAG   1
  *|||||=|||||||||||||*
targets:804   UAAAAAUAAAACAAACACAUA   824

2.0 PREDICTED: Glycine max abscisic acid receptor PYL2-like (LOC100805641), mRNA abscisic acid receptor PYL2-like(LOC100805641) coding protein psRNATarget
XM_006584665.2
ncRNA:21   CUUUUUGUUUUGUUUGUGUAG   1
  *=|||||||||||||=||||*
targets:104   AGAAAACAAAACAAAUACAUA   124

2.5 PREDICTED: Glycine max zinc finger protein HD1-like (LOC100816547), transcript variant X2, mRNA zinc finger protein HD1-like(LOC100816547) coding protein psRNATarget
XM_003532371.3
ncRNA:21   CUUUUUGUUUUGUUUGUGUAG   1
  *=|||||||||||||=||||*
targets:104   AGAAAACAAAACAAAUACAUA   124

2.5 PREDICTED: Glycine max zinc finger protein HD1-like (LOC100816547), transcript variant X1, mRNA zinc finger protein HD1-like(LOC100816547) coding protein psRNATarget
XM_006593461.2
ncRNA:21   CUUUUUGUUUUGUUUGUGUAG   1
  *|||||*||||||||=|||||
targets:96   AAAAAAAAAAACAAAUACAUC   116

2.5 PREDICTED: Glycine max probable sugar phosphate/phosphate translocator At3g11320 (LOC100818092), mRNA probable sugar phosphate/phosphate translocator At3g11320(LOC100818092) coding protein psRNATarget
XM_003554752.3
ncRNA:21   CUUUUUGUUUUGUUUGUGUAG   1
  *||||||||||||||||*||=
targets:3056   AAAAAACAAAACAAACAAAUU   3076

2.5 PREDICTED: Glycine max linoleate 13S-lipoxygenase 3-1, chloroplastic-like (LOC100811820), mRNA linoleate 13S-lipoxygenase 3-1, chloroplastic-like(LOC100811820) coding protein psRNATarget
AK285515.1
ncRNA:21   CUUUUUGUUUUGUUUGUGUAG   1
  *=|||||||||||||||||**
targets:130   AGAAAACAAAACAAACACACA   150

2.5 Glycine max cDNA, clone: GMFL01-10-N14 NA coding protein psRNATarget
XM_003542781.3
ncRNA:21   CUUUUUGUUUUGUUUGUGUAG   1
  *=|||||||||||||||||**
targets:199   AGAAAACAAAACAAACACACA   219

2.5 PREDICTED: Glycine max uncharacterized protein At5g39865-like (LOC100779952), transcript variant X1, mRNA uncharacterized protein At5g39865-like(LOC100779952) coding protein psRNATarget
XM_014765694.1
ncRNA:21   CUUUUUGUUUUGUUUGUGUAG   1
  *=|||||||||||||||||**
targets:201   AGAAAACAAAACAAACACACA   221

2.5 PREDICTED: Glycine max uncharacterized protein At5g39865-like (LOC100779952), transcript variant X3, mRNA uncharacterized protein At5g39865-like(LOC100779952) coding protein psRNATarget
XM_014768907.1
ncRNA:21   CUUUUUGUUUUGUUUGUGUAG   1
  |=|||||*|||||||||*|||
targets:821   GGAAAACCAAACAAACAAAUC   841

2.5 PREDICTED: Glycine max AT-hook motif nuclear-localized protein 7 (LOC100803208), transcript variant X2, mRNA AT-hook motif nuclear-localized protein 7(LOC100803208) coding protein psRNATarget
XM_003539129.3
ncRNA:21   CUUUUUGUUUUGUUUGUGUAG   1
  ||||||*=||||||||||||=
targets:985   GAAAAAAGAAACAAACACAUU   1005

3.0 PREDICTED: Glycine max serine/threonine-protein kinase D6PKL1-like (LOC100792154), mRNA serine/threonine-protein kinase D6PKL1-like(LOC100792154) coding protein psRNATarget
XM_006578039.2
ncRNA:21   CUUUUUGUUUU-GUUUGUGUAG   1
  |*|||||||||-||||||||||
targets:297   GCAAAACAAAAACAAACACAUC   318

3.0 PREDICTED: Glycine max uncharacterized LOC100807358 (LOC100807358), transcript variant X1, mRNA uncharacterized LOC100807358(LOC100807358) coding protein psRNATarget
XM_006592906.2
ncRNA:21   CUUUUUGUUUUGUUUGUGUAG   1
  *||=||*|||||||||||||=
targets:56   AAAGAAAAAAACAAACACAUU   76

3.0 PREDICTED: Glycine max transcription factor MYB86-like (LOC100784755), mRNA transcription factor MYB86-like(LOC100784755) coding protein psRNATarget
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