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BaseInfo

ncRNA ID novel_gma_miR146
Species Glycine max
Class miRNA
Genome position Chr20:12278110-12278218 [-]
Reference genome Glycine_max_v2.0
Source SRR1451628;SRR1451648;SRR1451650;SRR1451652;SRR1451653;SRR1451658;SRR1451661;SRR1451662;SRR835770;SRR835772;SRR1451618
Length 21
Mature sequence(if miRNA) 1 - UUAAAGUAUAGGGACCAAAUU - 21
Stem-loop(if miRNA) --                   A     A  G         ---------   AAG  UUG
  UUUGGUCCCUAUACUUUAA AAAUA GU GAUUUAGUU         UCU   CA   A
  ||||||||||||||||||| ||||| || |||||||||         |||   ||
  AAACCAGGGAUAUGAAAUU UUUAU CA CUAAAUCAG         AGA   GU   C
UU                   G     -  A         GAAUAAACC   -GA  UAG
Stem-loop sequence UUUGGUCCCUAUACUUUAAAAAAUAAGUGGAUUUAGUUUCUAAGCAUUGACGAUUGAGAGACCAAAUAAGGACUAAAUCAACUAUUUGUUAAAGUAUAGGGACCAAAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003533061.3
ncRNA:21   UUAAACCAGGGAUAUGAAAUU   1
  =*|||||||||||||||||||
targets:1640   GUUUUGGUCCCUAUACUUUAA   1660

0.0 PREDICTED: Glycine max uncharacterized lipoprotein syc1174_c-like (LOC100787317), mRNA uncharacterized lipoprotein syc1174_c-like(LOC100787317) coding protein psRNATarget
XM_006583838.2
ncRNA:21   UUAAACCAGGGAUAUGAAA-UU   1
  =*|||||||||||||||||-||
targets:3574   GUUUUGGUCCCUAUACUUUUAA   3595

3.0 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g09900-like (LOC100775884), transcript variant X2, mRNA pentatricopeptide repeat-containing protein At1g09900-like(LOC100775884) coding protein psRNATarget
XM_006583837.2
ncRNA:21   UUAAACCAGGGAUAUGAAA-UU   1
  =*|||||||||||||||||-||
targets:3717   GUUUUGGUCCCUAUACUUUUAA   3738

3.0 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g09900-like (LOC100775884), transcript variant X3, mRNA pentatricopeptide repeat-containing protein At1g09900-like(LOC100775884) coding protein psRNATarget