ncRNA ID | novel_gma_miR146 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr20:12278110-12278218 [-] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451628;SRR1451648;SRR1451650;SRR1451652;SRR1451653;SRR1451658;SRR1451661;SRR1451662;SRR835770;SRR835772;SRR1451618 |
Length | 21 |
Mature sequence(if miRNA) | 1 - UUAAAGUAUAGGGACCAAAUU - 21 |
Stem-loop(if miRNA) |
--                   A     A  G         ---------   AAG  UUG   UUUGGUCCCUAUACUUUAA AAAUA GU GAUUUAGUU         UCU   CA   A   ||||||||||||||||||| ||||| || |||||||||         |||   ||   AAACCAGGGAUAUGAAAUU UUUAU CA CUAAAUCAG         AGA   GU   C UU                   G     -  A         GAAUAAACC   -GA  UAG |
Stem-loop sequence | UUUGGUCCCUAUACUUUAAAAAAUAAGUGGAUUUAGUUUCUAAGCAUUGACGAUUGAGAGACCAAAUAAGGACUAAAUCAACUAUUUGUUAAAGUAUAGGGACCAAAUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_003533061.3 |
|
0.0 | PREDICTED: Glycine max uncharacterized lipoprotein syc1174_c-like (LOC100787317), mRNA | uncharacterized lipoprotein syc1174_c-like(LOC100787317) | coding protein | psRNATarget | |||||||||
XM_006583838.2 |
|
3.0 | PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g09900-like (LOC100775884), transcript variant X2, mRNA | pentatricopeptide repeat-containing protein At1g09900-like(LOC100775884) | coding protein | psRNATarget | |||||||||
XM_006583837.2 |
|
3.0 | PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g09900-like (LOC100775884), transcript variant X3, mRNA | pentatricopeptide repeat-containing protein At1g09900-like(LOC100775884) | coding protein | psRNATarget |