Search result

BaseInfo

ncRNA ID bra-miR9553-3p
Species Brassica rapa
Class miRNA
Genome position chrA1:7994267-7994454 [+]
Reference genome Brapa_1.1
Source miRBase
Length 22
Mature sequence(if miRNA) 121 - UAAUCAGCUCCAGCUAUGUACA - 142
Stem-loop(if miRNA) --------G   CA   --   CAACCAUGUACAAAGCUGAAGCUAAUUAUGUGAAGUAUGGUAAUCCCAUAAUUAGCUUAUAUUUUGGUAUUGGCUA
         GGG  AGA  GGG                                                                            A
         |||  |||  |||
         CCC  UCU  GGU                                                                            G
CAUGUGUCG   UC   AC   UUGUUUCACCAUCUUACCCUUGGUACAUGUAUCGACCUCGACUAAUACACUUCAGUCCGUAUAUAAUCUAAGAUCA
Stem-loop sequence GGGGCAAGAGGGCAACCAUGUACAAAGCUGAAGCUAAUUAUGUGAAGUAUGGUAAUCCCAUAAUUAGCUUAUAUUUUGGUAUUGGCUAAGACUAGAAUCUAAUAUAUGCCUGACUUCACAUAAUCAGCUCCAGCUAUGUACAUGGUUCCCAUUCUACCACUUUGUUUGGCAUCUCUCCCGCUGUGUAC

Reference

1 PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis";
Jiang J, Lv M, Liang Y, Ma Z, Cao J;
BMC Genomics. 15:146(2014).