Search result

BaseInfo

ncRNA ID	novel_gma_miR140
Species	Glycine max
Class	miRNA
Genome position	Chr20:34320104-34320220 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451628
Length	21
Mature sequence(if miRNA)	97 - UUAACUUAUGGGAGUAGCUCA - 117
Stem-loop(if miRNA)	--    U          C                  C         -     AUG   GA   AGCU CUCCCAUAAG UAAAAUCAAUUUAUGCAC UUAGCUUUU UAGAA   UUA  U   |||| |||||||||| |||||||||||||||||| ||||||||| |||||   |||   UCGA GAGGGUAUUC AUUUUAGUUGAGUACGUG AAUUGAAAA AUCUU   AGU  G AC    U          A                  -         U     -CG   AA
Stem-loop sequence	AGCUUCUCCCAUAAGCUAAAAUCAAUUUAUGCACCUUAGCUUUUUAGAAAUGUUAGAUGAAUGAGCUUCUAUAAAAGUUAAGUGCAUGAGUUGAUUUUAACUUAUGGGAGUAGCUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014779022.1	ncRNA:21   ACUCGAUGAGGGUAUUCAAUU   1   ||||=|*|||||||||||||| targets:558   UGAGUUUCUCCCAUAAGUUAA   578 Target Full Sequence	2.0	PREDICTED: Glycine max cysteine synthase-like (LOC100796465), transcript variant X4, mRNA	cysteine synthase-like(LOC100796465)	coding protein	psRNATarget
XM_014779020.1	ncRNA:21   ACUCGAUGAGGGUAUUCAAUU   1   ||||=|*|||||||||||||| targets:644   UGAGUUUCUCCCAUAAGUUAA   664 Target Full Sequence	2.0	PREDICTED: Glycine max cysteine synthase-like (LOC100796465), transcript variant X2, mRNA	cysteine synthase-like(LOC100796465)	coding protein	psRNATarget
XM_014779021.1	ncRNA:21   ACUCGAUGAGGGUAUUCAAUU   1   ||||=|*|||||||||||||| targets:668   UGAGUUUCUCCCAUAAGUUAA   688 Target Full Sequence	2.0	PREDICTED: Glycine max cysteine synthase-like (LOC100796465), transcript variant X3, mRNA	cysteine synthase-like(LOC100796465)	coding protein	psRNATarget
XM_014779019.1	ncRNA:21   ACUCGAUGAGGGUAUUCAAUU   1   ||||=|*|||||||||||||| targets:754   UGAGUUUCUCCCAUAAGUUAA   774 Target Full Sequence	2.0	PREDICTED: Glycine max cysteine synthase-like (LOC100796465), transcript variant X1, mRNA	cysteine synthase-like(LOC100796465)	coding protein	psRNATarget
AK244400.1	ncRNA:21   ACUCGAUGAGGGUAUUCAAUU   1   ||||||*|||=|||||||||| targets:1542   UGAGCUUCUCUCAUAAGUUAA   1562 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-02-O14	NA	coding protein	psRNATarget