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BaseInfo

ncRNA ID	bra-miR9553-5p
Species	Brassica rapa
Class	miRNA
Genome position	chrA1:7994267-7994454 [+]
Reference genome	Brapa_1.1
Source	miRBase
Length	22
Mature sequence(if miRNA)	21 - UACAAAGCUGAAGCUAAUUAUG - 42
Stem-loop(if miRNA)	--------G   CA   --   CAACCAUGUACAAAGCUGAAGCUAAUUAUGUGAAGUAUGGUAAUCCCAUAAUUAGCUUAUAUUUUGGUAUUGGCUA          GGG  AGA  GGG                                                                            A          |||  |||  |||          CCC  UCU  GGU                                                                            G CAUGUGUCG   UC   AC   UUGUUUCACCAUCUUACCCUUGGUACAUGUAUCGACCUCGACUAAUACACUUCAGUCCGUAUAUAAUCUAAGAUCA
Stem-loop sequence	GGGGCAAGAGGGCAACCAUGUACAAAGCUGAAGCUAAUUAUGUGAAGUAUGGUAAUCCCAUAAUUAGCUUAUAUUUUGGUAUUGGCUAAGACUAGAAUCUAAUAUAUGCCUGACUUCACAUAAUCAGCUCCAGCUAUGUACAUGGUUCCCAUUCUACCACUUUGUUUGGCAUCUCUCCCGCUGUGUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018655287.1	ncRNA:22   GUAUUAAUCGAAGUCGAAACAU   1   *|||||*||||||||*|||||| targets:627   GAUAAUGAGCUUCAGAUUUGUA   648 Target Full Sequence	2.5	PREDICTED: Brassica rapa G-type lectin S-receptor-like serine/threonine-protein kinase CES101 (LOC103840310), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018655286.1	ncRNA:22   GUAUUAAUCGAAGUCGAAACAU   1   *|||||*||||||||*|||||| targets:398   GAUAAUGAGCUUCAGAUUUGUA   419 Target Full Sequence	2.5	PREDICTED: Brassica rapa G-type lectin S-receptor-like serine/threonine-protein kinase CES101 (LOC103840310), transcript variant X1, mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014).