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BaseInfo

ncRNA ID novel_gma_miR132
Species Glycine max
Class miRNA
Genome position Chr19:8868803-8868888 [-]
Reference genome Glycine_max_v2.0
Source SRR1451628;SRR1451612;SRR1451621;SRR1451627
Length 21
Mature sequence(if miRNA) 1 - GCUCUCUAUCUUCUGUCAAUG - 21
Stem-loop(if miRNA) --                        --  A      C     A
  UUGACAGAAGAUAGAGAGCACAGG  UG UCAUAC CAAAA A
  ||||||||||||||||||||||||  || |||||| |||||
  AACUGUCUUCUAUCUCUCGUGUUU  AC AGUGUG GUUUU G
GU                        UG  G      U     C
Stem-loop sequence UUGACAGAAGAUAGAGAGCACAGGUGAUCAUACCCAAAAAAGCUUUUGUGUGUGAGCAGUUUUGUGCUCUCUAUCUUCUGUCAAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI410478.1
ncRNA:21   GUAACUGUCUUCUAUCUCUCG   1
  ==|||||||||||||||||||
targets:9   UGUUGACAGAAGAUAGAGAGC   29

0.0 Sequence 8603 from Patent EP2074227 NA coding protein psRNATarget
LQ242608.1
ncRNA:21   GUAACUGUCUUCUAUCUCUCG   1
  ==|||||||||||||||||||
targets:9   UGUUGACAGAAGAUAGAGAGC   29

0.0 Sequence 8603 from Patent EP2985353 NA coding protein psRNATarget
JB170939.1
ncRNA:21   GUAACUGUCUUCUAUCUCUCG   1
  ==|||||||||||||||||||
targets:9   UGUUGACAGAAGAUAGAGAGC   29

0.0 Sequence 8603 from Patent EP2559767 NA coding protein psRNATarget
BT093751.1
ncRNA:21   GUAACUGUCUUCUAUCUCUCG   1
  ==|||||||||||||||||||
targets:644   UGUUGACAGAAGAUAGAGAGC   664

0.0 Soybean clone JCVI-FLGm-17B4 unknown mRNA NA coding protein psRNATarget
XM_003549043.3
ncRNA:21   GUAACUGUCUUCUAUCUCUCG   1
  **||||*||=|||||||||||
targets:3736   GUUUGAAAGGAGAUAGAGAGC   3756

2.5 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At5g14080 (LOC100813184), mRNA pentatricopeptide repeat-containing protein At5g14080(LOC100813184) coding protein psRNATarget