| ncRNA ID | bra-miR319-5p |
| Species | Brassica rapa |
| Class | miRNA |
| Genome position | chrA1:7428122-7428320 [+] |
| Reference genome | Brapa_1.1 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 23 - AGAGCUUCCUUGAGUCCAUUC - 43 |
| Stem-loop(if miRNA) |
UUGUAGGGAUAUAUAUC A G UU CU G U A A - AC C C AA C --A AAA GAGGG GAGCUUCCUU AGUCCA CAGAGG GU A AUG UCCAAUU GUUU CCG UCAU CAU CA UA CGAGUU CU U ||||| |||||||||| |||||| |||||| || | ||| ||||||| |||| ||| |||| ||| || || |||||| || CUCUC CUCGAGGGAA UCAGGU GUUUCU UA U UAC AGGUUAA CAGA GGC AGUA GUA GU AU GCUCAG GA U -------------UUCU C G UG CU G - A A U GU A A AA U AUA AUU |
| Stem-loop sequence | UUGUAGGGAUAUAUAUCGAGGGAGAGCUUCCUUGAGUCCAUUCAGAGGCUGUGAUAUGAUCCAAUUAGUUUCCGACUCAUCCAUCCAAAUACCGAGUUACUAAAUUUUAAGAUAGACUCGUUAAAUGAAUGAAUGAUGCGGUAGACAAAUUGGAACAUUGAUUCUCUUUGGUUGGACUGAAGGGAGCUCCCUCUCUCUU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_009142912.2 |
|
2.0 | PREDICTED: Brassica rapa calcium-dependent protein kinase 24-like (LOC103865132), mRNA | calcium-dependent protein kinase 24-like(LOC103865132) | coding protein | psRNATarget | |||||||||
| XM_009109553.1 |
|
3.0 | PREDICTED: Brassica rapa uncharacterized LOC103833466 (LOC103833466), mRNA | uncharacterized LOC103833466(LOC103833466) | coding protein | psRNATarget | |||||||||
| XM_009152112.1 |
|
3.0 | PREDICTED: Brassica rapa uncharacterized LOC103873722 (LOC103873722), mRNA | uncharacterized LOC103873722(LOC103873722) | coding protein | psRNATarget |
| 1 | PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014). |