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BaseInfo

ncRNA ID novel_gma_miR114
Species Glycine max
Class miRNA
Genome position Chr18:52437791-52437865 [+]
Reference genome Glycine_max_v2.0
Source SRR1451628;SRR1451629;SRR1451633;SRR1451634;SRR1451635;SRR1451636;SRR1451638;SRR1451640;SRR1451641;SRR1451642;SRR1451643;SRR1451645;SRR1451646;SRR1451647;SRR1451654;SRR1451616;SRR1451617;SRR1451622;SRR1451624;SRR1451625;SRR1451626;SRR1451627
Length 21
Mature sequence(if miRNA) 1 - UCUGUUCCUUAUUAUAAGAAA - 21
Stem-loop(if miRNA) --          A                        
  UCUGUUCCUU UUAUAAGAAACAAGUUAUAGUGUAU
  |||||||||| ||||||||||||||||||||||||U
  AGACAAGGAA AAUAUUCUUUGUUCAAUAUCACAUU
GG          A                        
Stem-loop sequence UCUGUUCCUUAUUAUAAGAAACAAGUUAUAGUGUAUUUUACACUAUAACUUGUUUCUUAUAAAAAGGAACAGAGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003528082.3
ncRNA:21   AAAGAAUAUUAUUCCUUGUCU   1
  |||||||||||||||||||*|
targets:1871   UUUCUUAUAAUAAGGAACAUA   1891

1.5 PREDICTED: Glycine max uncharacterized LOC100814200 (LOC100814200), mRNA uncharacterized LOC100814200(LOC100814200) coding protein psRNATarget
XM_003525989.3
ncRNA:21   AAAGAAUAUUAUUCCUUGUCU   1
  |||||||*||||=||||||||
targets:694   UUUCUUAAAAUAGGGAACAGA   714

2.5 PREDICTED: Glycine max anthocyanidin 3-O-glucosyltransferase 5-like (LOC100810776), mRNA anthocyanidin 3-O-glucosyltransferase 5-like(LOC100810776) coding protein psRNATarget
XM_003518994.3
ncRNA:21   AAAGAAUAUUAUUCCUUGUCU   1
  *|*||||||||||||||||*|
targets:981   AUACUUAUAAUAAGGAACACA   1001

2.5 PREDICTED: Glycine max probable plastid-lipid-associated protein 13, chloroplastic (LOC100815867), transcript variant X1, mRNA probable plastid-lipid-associated protein 13, chloroplastic(LOC100815867) coding protein psRNATarget