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BaseInfo

ncRNA ID novel_gma_miR113
Species Glycine max
Class miRNA
Genome position Chr18:6437279-6437362 [+]
Reference genome Glycine_max_v2.0
Source SRR1451628
Length 21
Mature sequence(if miRNA) 1 - UUCCGGAUGAACAAUUUGUUC - 21
Stem-loop(if miRNA) --      AU      U      UA      A         C
  UUCCGG  GAACAA UUGUUC  CCGGAA AACCUUCUU C
  ||||||  |||||| ||||||  |||||| |||||||||
  AAGGCC  CUUGUU AACAAG  GGCUUU UUGGAAGAA G
AG      AU      U      UA      C         G
Stem-loop sequence UUCCGGAUGAACAAUUUGUUCUACCGGAAAAACCUUCUUCCGGAAGAAGGUUCUUUCGGAUGAACAAUUUGUUCUACCGGAAGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006588641.2
ncRNA:21   CUUGUUUAACAAGUAGGCCUU   1
  |||*||*||||||||||||||
targets:162   GAAGAACUUGUUCAUCCGGAA   182

2.0 PREDICTED: Glycine max uncharacterized LOC102667717 (LOC102667717), transcript variant X1, mRNA uncharacterized LOC102667717(LOC102667717) coding protein psRNATarget
XM_006588642.2
ncRNA:21   CUUGUUUAACAAGUAGGCCUU   1
  |||*||*||||||||||||||
targets:173   GAAGAACUUGUUCAUCCGGAA   193

2.0 PREDICTED: Glycine max uncharacterized LOC102667717 (LOC102667717), transcript variant X2, mRNA uncharacterized LOC102667717(LOC102667717) coding protein psRNATarget