Search result

BaseInfo

ncRNA ID novel_gma_miR108
Species Glycine max
Class miRNA
Genome position Chr18:12379988-12380077 [+]
Reference genome Glycine_max_v2.0
Source SRR1451628
Length 24
Mature sequence(if miRNA) 67 - ACAUUCUAAGACAGUUAUUACAUC - 90
Stem-loop(if miRNA) --         C         -AA   ACA             GU
  UGUAAUAAC GUCUUAGAA   CUA   UUCUAAGAUGGUU  U
  ||||||||| |||||||||   |||   |||||||||||||  U
  ACAUUAUUG CAGAAUCUU   GAU   AAGAUUCUGCUAA  A
CU         A         ACA   GAG             GA
Stem-loop sequence UGUAAUAACCGUCUUAGAAAACUAACAUUCUAAGAUGGUUGUUUAAGAAUCGUCUUAGAAGAGUAGACAUUCUAAGACAGUUAUUACAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014775607.1
ncRNA:24   CUACAUUAUUGACAGAAUCUUACA   1
  *|**|||||||||||||*||||||
targets:1506   UAACUAAUAACUGUCUUUGAAUGU   1529

1.5 PREDICTED: Glycine max protein MOR1 (LOC102659664), transcript variant X1, mRNA protein MOR1(LOC102659664) coding protein psRNATarget
XM_014767461.1
ncRNA:24   CUA--CAUUAUUGACAGAAUCUUACA   1
  |=|--||||*|||*||||||||||||
targets:2606   GGUUAGUAAAAACCGUCUUAGAAUGU   2631

2.5 PREDICTED: Glycine max putative dual specificity protein phosphatase DSP8 (LOC100787468), transcript variant X1, mRNA putative dual specificity protein phosphatase DSP8(LOC100787468) coding protein psRNATarget