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BaseInfo

ncRNA ID novel_gma_miR105
Species Glycine max
Class miRNA
Genome position Chr17:4594146-4594244 [-]
Reference genome Glycine_max_v2.0
Source SRR1451628;SRR1451633;SRR2968974;SRR1451604;SRR1451605;SRR1451608
Length 21
Mature sequence(if miRNA) 1 - CGGCAAGUAAUCUUUGGCUGC - 21
Stem-loop(if miRNA) --          G         A  CAU    -CAUG G     -     U
  AGCCAAGGAU ACUUGCCGG GU   AUUC     U AUGAU GAGGC A
  |||||||||| ||||||||| ||   ||||     | ||||| ||||| A
  UCGGUUUCUA UGAACGGCC CA   UGAG     A UGCUA UUUCG A
CG          A         -  -AU    UUAAA G     G     U
Stem-loop sequence AGCCAAGGAUGACUUGCCGGAGUCAUAUUCCAUGUGAUGAUGAGGCUAAAUGCUUUGAUCGUGAAAAUUGAGUUAACCCGGCAAGUAAUCUUUGGCUGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003532240.3
ncRNA:21   CGUCGGUUUCUAAUGAACGGC   1
  **|||||||||||*||||||*
targets:1904   AAAGCCAAAGAUUUCUUGCCU   1924

2.5 PREDICTED: Glycine max staphylococcal nuclease domain-containing protein 1 (LOC100782692), mRNA staphylococcal nuclease domain-containing protein 1(LOC100782692) coding protein psRNATarget