ncRNA ID | novel_gma_miR105 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr17:4594146-4594244 [-] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451628;SRR1451633;SRR2968974;SRR1451604;SRR1451605;SRR1451608 |
Length | 21 |
Mature sequence(if miRNA) | 1 - CGGCAAGUAAUCUUUGGCUGC - 21 |
Stem-loop(if miRNA) |
--          G         A  CAU    -CAUG G     -     U   AGCCAAGGAU ACUUGCCGG GU   AUUC     U AUGAU GAGGC A   |||||||||| ||||||||| ||   ||||     | ||||| ||||| A   UCGGUUUCUA UGAACGGCC CA   UGAG     A UGCUA UUUCG A CG          A         -  -AU    UUAAA G     G     U |
Stem-loop sequence | AGCCAAGGAUGACUUGCCGGAGUCAUAUUCCAUGUGAUGAUGAGGCUAAAUGCUUUGAUCGUGAAAAUUGAGUUAACCCGGCAAGUAAUCUUUGGCUGC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_003532240.3 |
|
2.5 | PREDICTED: Glycine max staphylococcal nuclease domain-containing protein 1 (LOC100782692), mRNA | staphylococcal nuclease domain-containing protein 1(LOC100782692) | coding protein | psRNATarget |