ncRNA ID | bra-miR5712 |
Species | Brassica rapa |
Class | miRNA |
Genome position | chrA1:6456454-6456595 [+] |
Reference genome | Brapa_1.1 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 110 - AAUAUUAAUAUAAUUGGUGAG - 130 |
Stem-loop(if miRNA) |
GUU     UAA                            AA          U    AA     AAGAGAGUUA    CACAU   GAAUCUCUCAUCAAUUAUAUUAGUAUUU  AUAGAAAGUU CUCA  AACUU          U    |||||   ||||||||||||||||||||||||||||  |||||||||| ||||  |||||    GUGUA   CUUAGAGAGUGGUUAAUAUAAUUAUAAA  UAUCUUUUAA GAGU  UUUUU          G --G     ---                            AC          -    CA     AGAUAGGAGC |
Stem-loop sequence | GUUCACAUUAAGAAUCUCUCAUCAAUUAUAUUAGUAUUUAAAUAGAAAGUUUCUCAAAAACUUAAGAGAGUUAUGCGAGGAUAGAUUUUUACUGAGAAUUUUCUAUCAAAAUAUUAAUAUAAUUGGUGAGAGAUUCAUGUGG |
1 | PMID:22025521
"Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa"; Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y; J Exp Bot. 63:1025-1038(2012). |