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BaseInfo

ncRNA ID bra-miR5712
Species Brassica rapa
Class miRNA
Genome position chrA1:6456454-6456595 [+]
Reference genome Brapa_1.1
Source miRBase
Length 21
Mature sequence(if miRNA) 110 - AAUAUUAAUAUAAUUGGUGAG - 130
Stem-loop(if miRNA) GUU     UAA                            AA          U    AA     AAGAGAGUUA
   CACAU   GAAUCUCUCAUCAAUUAUAUUAGUAUUU  AUAGAAAGUU CUCA  AACUU          U
   |||||   ||||||||||||||||||||||||||||  |||||||||| ||||  |||||
   GUGUA   CUUAGAGAGUGGUUAAUAUAAUUAUAAA  UAUCUUUUAA GAGU  UUUUU          G
--G     ---                            AC          -    CA     AGAUAGGAGC
Stem-loop sequence GUUCACAUUAAGAAUCUCUCAUCAAUUAUAUUAGUAUUUAAAUAGAAAGUUUCUCAAAAACUUAAGAGAGUUAUGCGAGGAUAGAUUUUUACUGAGAAUUUUCUAUCAAAAUAUUAAUAUAAUUGGUGAGAGAUUCAUGUGG

Reference

1 PMID:22025521
"Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa";
Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y;
J Exp Bot. 63:1025-1038(2012).