ncRNA ID | bra-miR168b-3p |
Species | Brassica rapa |
Class | miRNA |
Genome position | chrA1:5387909-5388035 [+] |
Reference genome | Brapa_1.1 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 91 - CCCGCCUUGCAUCAACUGAAU - 111 |
Stem-loop(if miRNA) |
------  -     G      C          U     -       G   -A     -   -CGU  A       CG GGCUC GAUUCG UUGGUGCAGG CGGGA CUAAUUC CUG  CACAG CCA    GG U       || ||||| |||||| |||||||||| ||||| ||||||| |||  ||||| |||    || U       GC CCGAG CUAAGU AACUACGUUC GCCCU GGUUAGG GAC  GUGUU GGU    CC U GUGGUA  U     G      C          C     A       -   GA     U   UAUU  U |
Stem-loop sequence | CGGGCUCGGAUUCGCUUGGUGCAGGUCGGGACUAAUUCGCUGACACAGCCACGUGGAUUUUCCUUAUUGGUUUGUGAGCAGGGAUUGGAUCCCGCCUUGCAUCAACUGAAUCGGAGCCUCGAUGGUG |
1 | PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014). |