ncRNA ID | novel_gma_miR86 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr10:6821283-6821362 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451628;SRR1451629;SRR1451630;SRR1451631;SRR1451632;SRR1451633;SRR1451634;SRR1451635;SRR1451636;SRR1451638;SRR1451639;SRR1451640;SRR1451641;SRR1451642;SRR1451643;SRR1451644;SRR1451646;SRR1451648;SRR1451649;SRR835766;SRR835767;DRR031984;SRR1451612;SRR1451613;SRR1451615;SRR1451616;SRR1451617;SRR1451618;SRR1451619;SRR1451620;SRR1451621;SRR1451622;SRR1451624;SRR1451626;SRR1451627 |
Length | 21 |
Mature sequence(if miRNA) | 1 - UUUUUGGUAGAUUUUGUUUCU - 21 |
Stem-loop(if miRNA) |
--UUU       A              U    AUUUUU  U      UUGGUAG UUUUGUUUCUCAUU AAUG      UC C      ||||||| |||||||||||||| ||||      ||      AACCGUC AAAACGAAGAGUAA UUAU      AG C UUGUU       C              C    --AUUU  U |
Stem-loop sequence | UUUUUGGUAGAUUUUGUUUCUCAUUUAAUGAUUUUUUCUCCUGAUUUAUAUUCAAUGAGAAGCAAAACCUGCCAAUUGUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_003556435.3 |
|
2.0 | PREDICTED: Glycine max putative E3 ubiquitin-protein ligase LIN (LOC100815587), transcript variant X2, mRNA | putative E3 ubiquitin-protein ligase LIN(LOC100815587) | coding protein | psRNATarget | |||||||||
XM_006605461.2 |
|
2.0 | PREDICTED: Glycine max putative E3 ubiquitin-protein ligase LIN (LOC100815587), transcript variant X1, mRNA | putative E3 ubiquitin-protein ligase LIN(LOC100815587) | coding protein | psRNATarget | |||||||||
XM_003551747.3 |
|
2.5 | PREDICTED: Glycine max proline-rich receptor-like protein kinase PERK8 (LOC100784873), mRNA | proline-rich receptor-like protein kinase PERK8(LOC100784873) | coding protein | psRNATarget | |||||||||
XM_003538578.3 |
|
2.5 | PREDICTED: Glycine max uncharacterized LOC100792492 (LOC100792492), mRNA | uncharacterized LOC100792492(LOC100792492) | coding protein | psRNATarget |