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BaseInfo

ncRNA ID bra-miR168b-5p
Species Brassica rapa
Class miRNA
Genome position chrA1:5387909-5388035 [+]
Reference genome Brapa_1.1
Source miRBase
Length 21
Mature sequence(if miRNA) 12 - UCGCUUGGUGCAGGUCGGGAC - 32
Stem-loop(if miRNA) ------  -     G      C          U     -       G   -A     -   -CGU  A
      CG GGCUC GAUUCG UUGGUGCAGG CGGGA CUAAUUC CUG  CACAG CCA    GG U
      || ||||| |||||| |||||||||| ||||| ||||||| |||  ||||| |||    || U
      GC CCGAG CUAAGU AACUACGUUC GCCCU GGUUAGG GAC  GUGUU GGU    CC U
GUGGUA  U     G      C          C     A       -   GA     U   UAUU  U
Stem-loop sequence CGGGCUCGGAUUCGCUUGGUGCAGGUCGGGACUAAUUCGCUGACACAGCCACGUGGAUUUUCCUUAUUGGUUUGUGAGCAGGGAUUGGAUCCCGCCUUGCAUCAACUGAAUCGGAGCCUCGAUGGUG

Reference

1 PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis";
Jiang J, Lv M, Liang Y, Ma Z, Cao J;
BMC Genomics. 15:146(2014).