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BaseInfo

ncRNA ID	bra-miR9566-5p
Species	Brassica rapa
Class	miRNA
Genome position	chrA1:4945796-4946013 [-]
Reference genome	Brapa_1.1
Source	miRBase
Length	22
Mature sequence(if miRNA)	121 - UUGUUGACAAAUACUUAGGCUC - 142
Stem-loop(if miRNA)	UCUGUAAUCUC        UAUUCGAAUUUAUACCGAAGUAGGGGACCAGCUCUAUCAAUCAAAAACCAAACUUCAUUGUUGACAAAUACUUAGGCUCUCUCUAGGUAAAAGA            UUGGUAUG                                                                                              A            ||||||||                                                                                              U            UUGGUUUG                                                                                              C -----------        AAGUAACAACUGUUUAUGAAUCCGAGAGAGAUCCAUUUUCUUAGUAGUAUAGAAAAUCAAACAUCAUCGACAGAAAUUGUGAUUUUCUAUACUA
Stem-loop sequence	UCUGUAAUCUCUUGGUAUGUAUUCGAAUUUAUACCGAAGUAGGGGACCAGCUCUAUCAAUCAAAAACCAAACUUCAUUGUUGACAAAUACUUAGGCUCUCUCUAGGUAAAAGAAUCAUCAUAUCUUUUAGUGUUAAAGACAGCUACUACAAACUAAAAGAUAUGAUGAUUCUUUUACCUAGAGAGAGCCUAAGUAUUUGUCAACAAUGAAGUUUGGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009134026.2	ncRNA:22   CUCGGAUUCAUAAACAGUUGUU   1   ||||||||||||||||||*||| targets:465   GAGCCUAAGUAUUUGUCAUCAA   486 Target Full Sequence	1.5	PREDICTED: Brassica rapa transcription repressor OFP5 (LOC103856899), mRNA	transcription repressor OFP5(LOC103856899)	coding protein	psRNATarget

Reference

1	PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014).