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BaseInfo

ncRNA ID novel_gma_miR62
Species Glycine max
Class miRNA
Genome position Chr10:39141246-39141329 [+]
Reference genome Glycine_max_v2.0
Source SRR1451628;SRR1451629;SRR1451630;SRR1451631;SRR1451632;SRR1451634;SRR1451635;SRR1451638;SRR1451640;SRR1451641;SRR1451642;SRR1451645;SRR1451646;SRR1451647;SRR1451648;SRR1451649;SRR835767;SRR835768;SRR1451612;SRR1451613;SRR1451615;SRR1451617;SRR1451620;SRR1451621;SRR1451623;SRR1451624;SRR1451626
Length 21
Mature sequence(if miRNA) 64 - UUAAAAAGUGUAUGUGUAGAU - 84
Stem-loop(if miRNA) --CC     -             CA         A    AUU
    ACGCA ACACUUUUUAAUC  UUUUAGUAC UACU   U
    ||||| |||||||||||||  ||||||||| ||||   U
    UGUGU UGUGAAAAAUUAG  AAAAUCAUG AUGA   G
UAGA     A             AG         G    CAG
Stem-loop sequence CCACGCAACACUUUUUAAUCCAUUUUAGUACAUACUAUUUUGGACAGUAGGUACUAAAAGAGAUUAAAAAGUGUAUGUGUAGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006576555.2
ncRNA:21   UAGAUGUGUAUGUGAAAAAUU   1
  **|||||||||||||||||**
targets:119   UACUACACAUACACUUUUUUC   139

2.5 PREDICTED: Glycine max transcription factor HY5-like (LOC100783826), transcript variant X1, mRNA transcription factor HY5-like(LOC100783826) coding protein psRNATarget
XM_006576556.2
ncRNA:21   UAGAUGUGUAUGUGAAAAAUU   1
  **|||||||||||||||||**
targets:127   UACUACACAUACACUUUUUUC   147

2.5 PREDICTED: Glycine max transcription factor HY5-like (LOC100783826), transcript variant X2, mRNA transcription factor HY5-like(LOC100783826) coding protein psRNATarget
XM_003544552.3
ncRNA:21   UAGAUGUGUAUGUGAAAAAUU   1
  *||||||*|*|||||||||||
targets:94   CUCUACAAACACACUUUUUAA   114

2.5 PREDICTED: Glycine max aspartate aminotransferase P2, mitochondrial-like (LOC100811514), transcript variant X1, mRNA aspartate aminotransferase P2, mitochondrial-like(LOC100811514) coding protein psRNATarget
XM_006599236.2
ncRNA:21   UAGAUGUGUAUGUGAAAAAUU   1
  ***|||||||||||*||||||
targets:467   CGAUACACAUACACAUUUUAA   487

2.5 PREDICTED: Glycine max uncharacterized LOC100788736 (LOC100788736), transcript variant X1, mRNA uncharacterized LOC100788736(LOC100788736) coding protein psRNATarget
XM_003521103.3
ncRNA:21   UAGAUGUGUAUGUGAAAAAUU   1
  =***|||=|||||||||||||
targets:387   GGACACAUAUACACUUUUUAA   407

3.0 PREDICTED: Glycine max triacylglycerol lipase SDP1-like (LOC100791261), mRNA triacylglycerol lipase SDP1-like(LOC100791261) coding protein psRNATarget