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BaseInfo

ncRNA ID novel_gma_miR44
Species Glycine max
Class miRNA
Genome position Chr13:30560393-30560445 [+]
Reference genome Glycine_max_v2.0
Source SRR1451628;SRR1451629;SRR1451630;SRR1451632;SRR1451633;SRR1451635;SRR1451636;SRR1451638;SRR1451640;SRR1451642;SRR1451644;SRR1451646;SRR1451607;SRR1451609;SRR1451611;SRR1451613;SRR1451616;SRR1451620;SRR1451623;SRR1451624;SRR1451626;SRR1451627
Length 21
Mature sequence(if miRNA) 1 - UCUUGAAAGUCAUGGGGAUCU - 21
Stem-loop(if miRNA) --     -       U      -   UU
  UCUUG AAAGUCA GGGGAU CUU  C
  ||||| ||||||| |||||| |||
  AGGGU UUUUAGU CCUCUA GAA  U
AG     G       -      U   UU
Stem-loop sequence UCUUGAAAGUCAUGGGGAUCUUUUCUUUAAGUAUCUCCUGAUUUUGUGGGAGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014764111.1
ncRNA:21   UCUAGGGGUACUGAAAGUUCU   1
  |||||||||||||||||||||
targets:4139   AGAUCCCCAUGACUUUCAAGA   4159

0.0 PREDICTED: Glycine max uncharacterized LOC106795195 (LOC106795195), transcript variant X2, mRNA uncharacterized LOC106795195(LOC106795195) coding protein psRNATarget
XM_014764110.1
ncRNA:21   UCUAGGGGUACUGAAAGUUCU   1
  |||||||||||||||||||||
targets:4268   AGAUCCCCAUGACUUUCAAGA   4288

0.0 PREDICTED: Glycine max uncharacterized LOC106795195 (LOC106795195), transcript variant X1, mRNA uncharacterized LOC106795195(LOC106795195) coding protein psRNATarget
XM_003555527.3
ncRNA:21   UCUAGGGGUACUGAAAGUUCU   1
  **||||||||||*||||||||
targets:1067   CAAUCCCCAUGAGUUUCAAGA   1087

1.5 PREDICTED: Glycine max leucine-rich repeat receptor-like protein kinase PXL1 (LOC100817339), mRNA leucine-rich repeat receptor-like protein kinase PXL1(LOC100817339) coding protein psRNATarget
XM_014764966.1
ncRNA:21   UCUAGGGGUACUGAAAGUUCU   1
  *||||||*=||||||||||||
targets:1661   UGAUCCCAGUGACUUUCAAGA   1681

2.5 PREDICTED: Glycine max uncharacterized LOC100803123 (LOC100803123), transcript variant X14, mRNA uncharacterized LOC100803123(LOC100803123) coding protein psRNATarget
XM_014764960.1
ncRNA:21   UCUAGGGGUACUGAAAGUUCU   1
  *||||||*=||||||||||||
targets:1665   UGAUCCCAGUGACUUUCAAGA   1685

2.5 PREDICTED: Glycine max uncharacterized LOC100803123 (LOC100803123), transcript variant X8, mRNA uncharacterized LOC100803123(LOC100803123) coding protein psRNATarget
XM_014764959.1
ncRNA:21   UCUAGGGGUACUGAAAGUUCU   1
  *||||||*=||||||||||||
targets:1488   UGAUCCCAGUGACUUUCAAGA   1508

2.5 PREDICTED: Glycine max uncharacterized LOC100803123 (LOC100803123), transcript variant X7, mRNA uncharacterized LOC100803123(LOC100803123) coding protein psRNATarget
XM_014764965.1
ncRNA:21   UCUAGGGGUACUGAAAGUUCU   1
  *||||||*=||||||||||||
targets:1657   UGAUCCCAGUGACUUUCAAGA   1677

2.5 PREDICTED: Glycine max uncharacterized LOC100803123 (LOC100803123), transcript variant X13, mRNA uncharacterized LOC100803123(LOC100803123) coding protein psRNATarget
XM_014764962.1
ncRNA:21   UCUAGGGGUACUGAAAGUUCU   1
  *||||||*=||||||||||||
targets:1558   UGAUCCCAGUGACUUUCAAGA   1578

2.5 PREDICTED: Glycine max uncharacterized LOC100803123 (LOC100803123), transcript variant X10, mRNA uncharacterized LOC100803123(LOC100803123) coding protein psRNATarget
XM_014764954.1
ncRNA:21   UCUAGGGGUACUGAAAGUUCU   1
  *||||||*=||||||||||||
targets:1561   UGAUCCCAGUGACUUUCAAGA   1581

2.5 PREDICTED: Glycine max uncharacterized LOC100803123 (LOC100803123), transcript variant X3, mRNA uncharacterized LOC100803123(LOC100803123) coding protein psRNATarget
XM_014764953.1
ncRNA:21   UCUAGGGGUACUGAAAGUUCU   1
  *||||||*=||||||||||||
targets:1564   UGAUCCCAGUGACUUUCAAGA   1584

2.5 PREDICTED: Glycine max uncharacterized LOC100803123 (LOC100803123), transcript variant X2, mRNA uncharacterized LOC100803123(LOC100803123) coding protein psRNATarget
XM_014764958.1
ncRNA:21   UCUAGGGGUACUGAAAGUUCU   1
  *||||||*=||||||||||||
targets:1668   UGAUCCCAGUGACUUUCAAGA   1688

2.5 PREDICTED: Glycine max uncharacterized LOC100803123 (LOC100803123), transcript variant X6, mRNA uncharacterized LOC100803123(LOC100803123) coding protein psRNATarget
XM_014764963.1
ncRNA:21   UCUAGGGGUACUGAAAGUUCU   1
  *||||||*=||||||||||||
targets:1614   UGAUCCCAGUGACUUUCAAGA   1634

2.5 PREDICTED: Glycine max uncharacterized LOC100803123 (LOC100803123), transcript variant X11, mRNA uncharacterized LOC100803123(LOC100803123) coding protein psRNATarget
XM_014764957.1
ncRNA:21   UCUAGGGGUACUGAAAGUUCU   1
  *||||||*=||||||||||||
targets:1632   UGAUCCCAGUGACUUUCAAGA   1652

2.5 PREDICTED: Glycine max uncharacterized LOC100803123 (LOC100803123), transcript variant X5, mRNA uncharacterized LOC100803123(LOC100803123) coding protein psRNATarget
XM_014764955.1
ncRNA:21   UCUAGGGGUACUGAAAGUUCU   1
  *||||||*=||||||||||||
targets:1667   UGAUCCCAGUGACUUUCAAGA   1687

2.5 PREDICTED: Glycine max uncharacterized LOC100803123 (LOC100803123), transcript variant X4, mRNA uncharacterized LOC100803123(LOC100803123) coding protein psRNATarget
XM_014764952.1
ncRNA:21   UCUAGGGGUACUGAAAGUUCU   1
  *||||||*=||||||||||||
targets:1670   UGAUCCCAGUGACUUUCAAGA   1690

2.5 PREDICTED: Glycine max uncharacterized LOC100803123 (LOC100803123), transcript variant X1, mRNA uncharacterized LOC100803123(LOC100803123) coding protein psRNATarget
XM_014764964.1
ncRNA:21   UCUAGGGGUACUGAAAGUUCU   1
  *||||||*=||||||||||||
targets:1753   UGAUCCCAGUGACUUUCAAGA   1773

2.5 PREDICTED: Glycine max uncharacterized LOC100803123 (LOC100803123), transcript variant X12, mRNA uncharacterized LOC100803123(LOC100803123) coding protein psRNATarget
XM_014764961.1
ncRNA:21   UCUAGGGGUACUGAAAGUUCU   1
  *||||||*=||||||||||||
targets:1866   UGAUCCCAGUGACUUUCAAGA   1886

2.5 PREDICTED: Glycine max uncharacterized LOC100803123 (LOC100803123), transcript variant X9, mRNA uncharacterized LOC100803123(LOC100803123) coding protein psRNATarget
NM_001250235.2
ncRNA:21   UCUAGGGGUACUGAAAGUUCU   1
  **=||*||||||||||||||*
targets:17   UCGUCACCAUGACUUUCAAGC   37

3.0 Glycine max uncharacterized LOC100527516 (LOC100527516), mRNA uncharacterized LOC100527516(LOC100527516) coding protein psRNATarget
BT092363.1
ncRNA:21   UCUAGGGGUACUGAAAGUUCU   1
  **=||*||||||||||||||*
targets:20   UCGUCACCAUGACUUUCAAGC   40

3.0 Soybean clone JCVI-FLGm-10B22 unknown mRNA NA coding protein psRNATarget
AK285803.1
ncRNA:21   UCUAGGGGUACUGAAAGUUCU   1
  **=||*||||||||||||||*
targets:20   UCGUCACCAUGACUUUCAAGC   40

3.0 Glycine max cDNA, clone: GMFL01-16-L18 NA coding protein psRNATarget
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