Search result

BaseInfo

ncRNA ID	novel_gma_miR32
Species	Glycine max
Class	miRNA
Genome position	Chr12:8648637-8648771 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451628
Length	21
Mature sequence(if miRNA)	1 - UUUUGGUGCUGUUUUCCAAUC - 21
Stem-loop(if miRNA)	--        C      C    C A    -----       C        C   UACAUAUCGAAG   U  AU   UUUUGGUG UGUUUU CAAU A AAUU     AGAGUUU ACCUCGGU AUC            GUU GC  U   |||||||| |||||| |||| | ||||     ||||||| |||||||| |||            ||| ||  G   AAAACUAC ACAAAA GUUA U UUAG     UUUCAAA UGGAGCUA UAG            CAA UG  A UG        A      A    A C    ACUAC       A        U   ---------UUA   U  AA
Stem-loop sequence	UUUUGGUGCUGUUUUCCAAUCAAAAUUAGAGUUUCACCUCGGUCAUCUACAUAUCGAAGGUUUGCAUUGAAAGUUAACAUUGAUUAUCGAGGUAAAACUUUCAUCAGAUUCUAAUUGAAAAACAACAUCAAAAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003539909.3	ncRNA:21   CUAACCUUUUGUCGUGGUUUU   1   ||||||||||||*|||||||| targets:1876   GAUUGGAAAACAACACCAAAA   1896 Target Full Sequence	1.5	PREDICTED: Glycine max basic leucine zipper 61 (LOC100101873), mRNA	basic leucine zipper 61(LOC100101873)	coding protein	psRNATarget
AK287327.1	ncRNA:21   CUAACCUUUUGUCGUGGUUUU   1   |||||||=||||*|||||||| targets:825   GAUUGGAGAACAACACCAAAA   845 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-49-O18	NA	coding protein	psRNATarget
XM_003517326.3	ncRNA:21   CUAACCUUUUGUCGUGGUUUU   1   |||||*||||=|||||||||| targets:1658   GAUUGAAAAAUAGCACCAAAA   1678 Target Full Sequence	2.5	PREDICTED: Glycine max ectonucleotide pyrophosphatase/phosphodiesterase family member 3-like (LOC100789438), mRNA	ectonucleotide pyrophosphatase/phosphodiesterase family member 3-like(LOC100789438)	coding protein	psRNATarget
XM_003519237.3	ncRNA:21   CUAACCUUUUGUCGUGGUUUU   1   |*|||||=||=|||||||||| targets:1795   GUUUGGAGAAUAGCACCAAAA   1815 Target Full Sequence	2.5	PREDICTED: Glycine max tyrosine--tRNA ligase, chloroplastic/mitochondrial-like (LOC100813016), mRNA	tyrosine--tRNA ligase, chloroplastic/mitochondrial-like(LOC100813016)	coding protein	psRNATarget
XM_006576112.2	ncRNA:21   CUAACCUUUUGUCGUGGUUUU   1   *||||||=||||*|||||||| targets:1028   AAUUGGAGAACACCACCAAAA   1048 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100499989 (LOC100499989), transcript variant X2, mRNA	uncharacterized LOC100499989(LOC100499989)	coding protein	psRNATarget
XM_006576111.1	ncRNA:21   CUAACCUUUUGUCGUGGUUUU   1   *||||||=||||*|||||||| targets:1097   AAUUGGAGAACACCACCAAAA   1117 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100499989 (LOC100499989), transcript variant X1, mRNA	uncharacterized LOC100499989(LOC100499989)	coding protein	psRNATarget
XM_006585934.2	ncRNA:21   CUAACCUUUUGUCGUGGUUUU   1   |||**||=||||||||||||| targets:528   GAUCCGAGAACAGCACCAAAA   548 Target Full Sequence	3.0	PREDICTED: Glycine max mucin-21-like (LOC100790656), transcript variant X2, mRNA	mucin-21-like(LOC100790656)	coding protein	psRNATarget